SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 "Winged helix" DNA-binding domain
        Family:
 Iron-dependent repressor protein
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 "Winged helix" DNA-binding domain
        Family:
 Iron-dependent repressor protein
protein domain  species  PDB ID  instances  bonded 
Diphtheria toxin repressor (DtxR) Corynebacterium diphtheriae [TaxId: 1717] 1c0w 4 4
Diphtheria toxin repressor (DtxR) Corynebacterium diphtheriae [TaxId: 1717] 1f5t 4 4
Diphtheria toxin repressor (DtxR) Corynebacterium diphtheriae [TaxId: 1717] 1ddn 4 4
Iron-dependent regulator IdeR Mycobacterium tuberculosis [TaxId: 1773] 1u8r 8 8
Iron-dependent regulator IdeR Mycobacterium tuberculosis [TaxId: 1773] 2isz 4 4
Iron-dependent regulator IdeR Mycobacterium tuberculosis [TaxId: 1773] 2it0 4 4
Total: 6 28 28
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj L-Bb L-Mj 
Method of 3-D alignment: SSM
Quality of 3-D alignment: high
Analized family: Iron-dependent repressor protein [ a.4.5.24 ]
Analized complexes: 34
Complexes with DNA: 6
Conserved water: 87
Download:
Sequence alignment: a_4_5_24.fas ]
Sequence alignment with secondary structure: a_4_5_24_with_ss.fas ]
Superposition in PDB format: a.4.5.24.pdb ]
Alignment in MSF: a_4_5_24.msf ]
Image of alignment with secondary structure marked: a_4_5_24.PNG ]
Water clusters: a.4.5.24.flat.txt ]
a.4.5.24.pivot.txt ]
RasMol script: a.4.5.24.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1g3w A 4 64 1
ON
1g3s A 4 64 2
ON
1bi1 N/A 4 64 3
ON
1fwz A 4 64 4
ON
1p92 A 1 64 5
ON
1xcv A 1 64 6
ON
1g3t A 3 64 7
ON
1g3t B 1003 1064 8
ON
1bi3 A 4 64 9
ON
1bi3 B 4 64 10
ON
1bi2 A 3 64 11
ON
1bi2 B 3 64 12
ON
2tdx N/A 1 64 13
ON
1bi0 N/A 4 64 14
ON
2dtr N/A 4 64 15
ON
1g3y A 3 64 16
ON
1f5t A 1002 1064 17
ON
1f5t B 2002 2064 18
ON
1f5t C 3002 3064 19
ON
1f5t D 4002 4064 20
ON
1dpr A 3 64 21
ON
1dpr B 3 64 22
ON
1ddn A 3 64 23
ON
1ddn B 3 64 24
ON
1ddn C 3 64 25
ON
1ddn D 3 64 26
ON
1c0w A 2 64 27
ON
1c0w B 2 64 28
ON
1c0w C 2 64 29
ON
1c0w D 2 64 30
ON
2isy A 2 64 31
ON
2isy B 2 64 32
ON
1fx7 A 1 64 33
ON
1fx7 B 1 64 34
ON
1fx7 C 1 64 35
ON
1fx7 D 1 64 36
ON
2isz A 2 64 37
ON
2isz B 2 64 38
ON
2isz C 2 64 39
ON
2isz D 2 64 40
ON
2it0 A 3 64 41
ON
2it0 B 3 64 42
ON
2it0 C 3 64 43
ON
2it0 D 3 64 44
ON
1u8r A 1 64 45
ON
1u8r B 1 64 46
ON
1u8r C 1 64 47
ON
1u8r D 1 64 48
ON
1u8r G 1 64 49
ON
1u8r H 1 64 50
ON
1u8r I 1 64 51
ON
1u8r J 1 64 52
ON
1b1b A 1 64 53
ON
1on2 A 2 62 54
ON
1on2 B 2 62 55
ON
2ev0 A 2 62 56
ON
2ev0 B 2 62 57
ON
2ev6 A 4 62 58
ON
2ev6 B 4 62 59
ON
1on1 A 2 62 60
ON
1on1 B 2 62 61
ON
2f5d A 3 62 62
ON
2f5d B 2 62 63
ON
2ev5 A 3 62 64
ON
2ev5 B 4 62 65
ON
2f5e A 2 62 66
ON
2f5e B 2 62 67
ON
2f5f A 4 62 68
ON
2f5f B 2 62 69
ON
2f5c A 3 62 70
ON
2hyf A 3 62 71
ON
2hyf B 3 62 72
ON
2hyf C 3 62 73
ON
2hyf D 3 62 74
ON
2hyg D 3 62 75
ON
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