SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 C-terminal effector domain of the bipartite response regulators
        Family:
 GerE-like (LuxR/UhpA family of transcriptional regulators)
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 C-terminal effector domain of the bipartite response regulators
        Family:
 GerE-like (LuxR/UhpA family of transcriptional regulators)
protein domain  species  PDB ID  instances  bonded 
Nitrate/nitrite response regulator (NarL) Escherichia coli [TaxId: 562] 1je8 4 4
Nitrate/nitrite response regulator (NarL) Escherichia coli [TaxId: 562] 1zg1 4 4
Nitrate/nitrite response regulator (NarL) Escherichia coli [TaxId: 562] 1zg5 4 4
Quorum-sensing transcription factor TraR, C-terminal domain Agrobacterium tumefaciens [TaxId: 358] 1l3l 4 4
Quorum-sensing transcription factor TraR, C-terminal domain Agrobacterium tumefaciens [TaxId: 358] 1h0m 4 4
Total: 5 20 20
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj L-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: middle
Analized family: GerE-like (LuxR/UhpA family of transcriptional regulators) [ a.4.6.2 ]
Analized complexes: 11
Complexes with DNA: 5
Conserved water: 161
Download:
Sequence alignment: a_4_6_2.fas ]
Sequence alignment with secondary structure: a_4_6_2_with_ss.fas ]
Superposition in PDB format: a.4.6.2.pdb ]
Alignment in MSF: a_4_6_2.msf ]
Image of alignment with secondary structure marked: a_4_6_2.PNG ]
Water clusters: a.4.6.2.flat.txt ]
a.4.6.2.pivot.txt ]
RasMol script: a.4.6.2.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1fse A - - 1
ON
1fse B - - 2
ON
1fse C - - 3
ON
1fse D - - 4
ON
1fse E - - 5
ON
1fse F - - 6
ON
1l3l A 170 234 7
ON
1l3l B 170 234 8
ON
1l3l C 172 234 9
ON
1l3l D 172 234 10
ON
1h0m A 170 234 11
ON
1h0m B 170 234 12
ON
1h0m C 171 234 13
ON
1h0m D 170 234 14
ON
1je8 A - - 15
ON
1je8 B - - 16
ON
1je8 E - - 17
ON
1je8 F - - 18
ON
1a04 A 150 216 19
ON
1a04 B 150 216 20
ON
1rnl N/A 155 216 21
ON
1zg5 A 151 216 22
ON
1zg5 B 151 216 23
ON
1zg5 E 151 216 24
ON
1zg5 F 151 216 25
ON
1zg1 A 151 216 26
ON
1zg1 B 151 216 27
ON
1zg1 E 151 216 28
ON
1zg1 F 151 216 29
ON
1p4w A - - 30
ON
1yio A 131 200 31
ON
1zn2 A 131 200 32
ON
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