SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 Putative DNA-binding domain
      Superfamily:
 Putative DNA-binding domain
        Family:
 DNA-binding N-terminal domain of transcription activators
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 Putative DNA-binding domain
      Superfamily:
 Putative DNA-binding domain
        Family:
 DNA-binding N-terminal domain of transcription activators
protein domain  species  PDB ID  instances  bonded 
Multidrug transporter activator MtaN Bacillus subtilis [TaxId: 1423] 1r8d 2 2
Transcription activator BmrR Bacillus subtilis [TaxId: 1423] 1r8e 1 1
Transcription activator BmrR Bacillus subtilis [TaxId: 1423] 3d6y 1 1
Transcription activator BmrR Bacillus subtilis [TaxId: 1423] 3d6z 1 1
Transcription activator BmrR Bacillus subtilis [TaxId: 1423] 3d70 1 1
Transcription activator BmrR Bacillus subtilis [TaxId: 1423] 3d71 1 1
Transcription activator BmrR Bacillus subtilis [TaxId: 1423] 1exj 1 1
Transcription activator BmrR Bacillus subtilis [TaxId: 1423] 1exi 1 1
Total: 8 9 9
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj L-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: middle
Analized family: DNA-binding N-terminal domain of transcription activators [ a.6.1.3 ]
Analized complexes: 11
Complexes with DNA: 4
Conserved water: 0
Download:
Sequence alignment: a_6_1_3.fas ]
Sequence alignment with secondary structure: a_6_1_3_with_ss.fas ]
Superposition in PDB format: a.6.1.3.pdb ]
Alignment in MSF: a_6_1_3.msf ]
Image of alignment with secondary structure marked: a_6_1_3.PNG ]
Water clusters: NONE
NONE
RasMol script: NONE
PDB ID Chain Start residue End residue Model number Show
1r8e A 3 120 1
ON
1exj A 3 120 2
ON
1exi A 3 120 3
ON
1r8d A - - 4
ON
1r8d B - - 5
ON
1jbg A - - 6
ON
1q06 A - - 7
ON
1q06 B - - 8
ON
1q05 A - - 9
ON
1q05 B - - 10
ON
1q07 A - - 11
ON
1q07 B - - 12
ON
1q08 A - - 13
ON
1q08 B - - 14
ON
1q0a A - - 15
ON
1q0a B - - 16
ON
1q09 A - - 17
ON
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