SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 Histone-fold
      Superfamily:
 Histone-fold
        Family:
 TBP-associated factors, TAFs
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 Histone-fold
      Superfamily:
 Histone-fold
        Family:
 TBP-associated factors, TAFs
protein domain  species  PDB ID  instances  bonded 
Negative cofactor 2, NC2, alpha chain Human (Homo sapiens) [TaxId: 9606] 1jfi 2 2
Total: 1 2 2
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: middle
Analized family: TBP-associated factors, TAFs [ a.22.1.3 ]
Analized complexes: 9
Complexes with DNA: 1
Conserved water: 69
Download:
Sequence alignment: a_22_1_3.fas ]
Sequence alignment with secondary structure: a_22_1_3_with_ss.fas ]
Superposition in PDB format: a.22.1.3.pdb ]
Alignment in MSF: a_22_1_3.msf ]
Image of alignment with secondary structure marked: a_22_1_3.PNG ]
Water clusters: a.22.1.3.flat.txt ]
a.22.1.3.pivot.txt ]
RasMol script: a.22.1.3.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1taf A - - 1
ON
1taf B - - 2
ON
1bh9 A - - 3
ON
1bh8 A - - 4
ON
1bh9 B - - 5
ON
1bh8 B - - 6
ON
1h3o A - - 7
ON
1h3o C - - 8
ON
1h3o B - - 9
ON
1h3o D - - 10
ON
1jfi A - - 11
ON
1jfi B - - 12
ON
1n1j A - - 13
ON
1n1j B - - 14
ON
1q9c A - - 15
ON
1q9c B - - 16
ON
1q9c C - - 17
ON
1q9c D - - 18
ON
1q9c E - - 19
ON
1q9c F - - 20
ON
1q9c G - - 21
ON
1q9c H - - 22
ON
1q9c I - - 23
ON
2byk B 11 99 24
ON
2byk D 11 98 25
ON
2bym B 13 95 26
ON
2bym D 12 97 27
ON
2byk A 29 100 28
ON
2byk C 33 98 29
ON
2bym A 35 99 30
ON
2bym C 36 99 31
ON
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