SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 lambda repressor-like DNA-binding domains
      Superfamily:
 lambda repressor-like DNA-binding domains
        Family:
 POU-specific domain
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 lambda repressor-like DNA-binding domains
      Superfamily:
 lambda repressor-like DNA-binding domains
        Family:
 POU-specific domain
protein domain  species  PDB ID  instances  bonded 
Hepatocyte nuclear factor 1a (LFB1/HNF1) Human (Homo sapiens) [TaxId: 9606] 1ic8 2 2
Oct-1 Human (Homo sapiens) [TaxId: 9606] 1e3o 1 1
Oct-1 Human (Homo sapiens) [TaxId: 9606] 1hf0 2 2
Oct-1 Human (Homo sapiens) [TaxId: 9606] 1gt0 1 1
Oct-1 Human (Homo sapiens) [TaxId: 9606] 1o4x 1 1
Oct-1 Human (Homo sapiens) [TaxId: 9606] 1oct 1 1
Oct-1 Human (Homo sapiens) [TaxId: 9606] 1cqt 2 2
Pit-1 Rat (Rattus norvegicus) [TaxId: 10116] 1au7 2 2
Total: 8 12 12
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj L-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: middle
Analized family: POU-specific domain [ a.35.1.1 ]
Analized complexes: 9
Complexes with DNA: 8
Conserved water: 36
Download:
Sequence alignment: a_35_1_1.fas ]
Sequence alignment with secondary structure: a_35_1_1_with_ss.fas ]
Superposition in PDB format: a.35.1.1.pdb ]
Alignment in MSF: a_35_1_1.msf ]
Image of alignment with secondary structure marked: a_35_1_1.PNG ]
Water clusters: a.35.1.1.flat.txt ]
a.35.1.1.pivot.txt ]
RasMol script: a.35.1.1.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1e3o C 1 75 1
ON
1gt0 C 3 77 2
ON
1hf0 A 6 75 3
ON
1hf0 B 6 75 4
ON
1oct C 5 75 5
ON
1cqt A 2 75 6
ON
1cqt B 505 575 7
ON
1o4x A 5 79 8
ON
1pou N/A - - 9
ON
1au7 A 5 76 10
ON
1au7 B 5 74 11
ON
1ic8 A 87 180 12
ON
1ic8 B 85 179 13
ON
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