SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 IHF-like DNA-binding proteins
      Superfamily:
 IHF-like DNA-binding proteins
        Family:
 Prokaryotic DNA-bending protein
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 IHF-like DNA-binding proteins
      Superfamily:
 IHF-like DNA-binding proteins
        Family:
 Prokaryotic DNA-bending protein
protein domain  species  PDB ID  instances  bonded 
HU protein Anabaena sp. [TaxId: 1167] 1p71 2 2
HU protein Anabaena sp. [TaxId: 1167] 1p78 2 2
HU protein Anabaena sp. [TaxId: 1167] 1p51 4 4
Integration host factor alpha subunit (IHFA) Escherichia coli [TaxId: 562] 2ht0 2 2
Integration host factor alpha subunit (IHFA) Escherichia coli [TaxId: 562] 1ihf 2 2
Integration host factor alpha subunit (IHFA) Escherichia coli [TaxId: 562] 1ouz 2 2
Integration host factor alpha subunit (IHFA) Escherichia coli [TaxId: 562] 1owf 2 2
Integration host factor alpha subunit (IHFA) Escherichia coli [TaxId: 562] 1owg 2 2
Total: 8 18 18
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb S-Bb L-Bb L-Mn 
Method of 3-D alignment: SSM
Quality of 3-D alignment: low
Analized family: Prokaryotic DNA-bending protein [ a.55.1.1 ]
Analized complexes: 16
Complexes with DNA: 8
Conserved water: 265
Download:
Sequence alignment: a_55_1_1.fas ]
Sequence alignment with secondary structure: a_55_1_1_with_ss.fas ]
Superposition in PDB format: a.55.1.1.pdb ]
Alignment in MSF: a_55_1_1.msf ]
Image of alignment with secondary structure marked: a_55_1_1.PNG ]
Water clusters: a.55.1.1.flat.txt ]
a.55.1.1.pivot.txt ]
RasMol script: a.55.1.1.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1owf A - - 1
ON
2ht0 A 2 97 2
ON
1owg A - - 3
ON
1ihf A - - 4
ON
1ouz A - - 5
ON
1owf B - - 6
ON
2ht0 B 1 93 7
ON
1owg B - - 8
ON
1ihf B - - 9
ON
1ouz B - - 10
ON
1huu A - - 11
ON
1huu B - - 12
ON
1huu C - - 13
ON
1hue A - - 14
ON
1hue B - - 15
ON
1b8z A - - 16
ON
1b8z B - - 17
ON
1riy A - - 18
ON
1p71 A - - 19
ON
1p71 B - - 20
ON
1p78 A - - 21
ON
1p78 B - - 22
ON
1p51 A - - 23
ON
1p51 B - - 24
ON
1p51 C - - 25
ON
1p51 D - - 26
ON
1mul A - - 27
ON
2o97 A 1 90 28
ON
1exe A - - 29
ON
1exe B - - 30
ON
1wtu A - - 31
ON
1wtu B - - 32
ON
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