SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 Cyclin-like
      Superfamily:
 Cyclin-like
        Family:
 Transcription factor IIB (TFIIB), core domain
protein domain ↓ species  PDB ID  instances  bonded 
Transcription factor IIB (TFIIB), core domain Human (Homo sapiens) [TaxId: 9606] 1vol 2 2
Transcription factor IIB (TFIIB), core domain Human (Homo sapiens) [TaxId: 9606] 1c9b 10 10
Transcription factor IIB (TFIIB), core domain Archaeon Pyrococcus woesei [TaxId: 2262] 1ais 2 2
Transcription factor IIB (TFIIB), core domain Archaeon Pyrococcus woesei [TaxId: 2262] 1d3u 2 2
Total: 4 16 16
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: low
Analized family: Transcription factor IIB (TFIIB), core domain [ a.74.1.2 ]
Analized complexes: 6
Complexes with DNA: 4
Conserved water: 64
Download:
Sequence alignment: [ a_74_1_2.fas ]
Sequence alignment with secondary structure: [ a_74_1_2_with_ss.fas ]
Superposition in PDB format: [ a.74.1.2.pdb ]
Alignment in MSF: [ a_74_1_2.msf ]
Image of alignment with secondary structure marked: [ a_74_1_2.PNG ]
Water clusters: [ a.74.1.2.flat.txt ]
[ a.74.1.2.pivot.txt ]
RasMol script: [ a.74.1.2.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1vol A 113 207 1
ON
1vol A 208 316 2
ON
1c9b A 110 207 3
ON
1c9b A 208 316 4
ON
1c9b E 110 207 5
ON
1c9b E 208 316 6
ON
1c9b I 110 207 7
ON
1c9b I 208 316 8
ON
1c9b M 110 207 9
ON
1c9b M 208 316 10
ON
1c9b Q 110 207 11
ON
1c9b Q 208 316 12
ON
2phg A 112 207 13
ON
2phg A 208 316 14
ON
1tfb N/A 111 207 15
ON
1tfb N/A 208 316 16
ON
1ais B 1108 1205 17
ON
1ais B 1206 1300 18
ON
1d3u B 1100 1205 19
ON
1d3u B 1206 1300 20
ON
© NPIDB team 2003 - 2021

text