SCOP:
All list
![]() Class:
All alpha proteins
![]() Fold:
Cyclin-like
![]() Superfamily:
Cyclin-like
![]() Family:
Transcription factor IIB (TFIIB), core domain
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protein domain ↓ | species  | PDB ID  | instances  | bonded  |
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1vol | 2 | 2 |
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1c9b | 10 | 10 |
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1ais | 2 | 2 |
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1d3u | 2 | 2 |
Total: | 4 | 16 | 16 | |
Extended information about type of interaction with DNA: |
General | ||
Interaction class: | H-Bb |
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Method of 3-D alignment:
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SSM
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Quality of 3-D alignment:
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low | |
Analized family: |
Transcription factor IIB (TFIIB), core domain [ a.74.1.2
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Analized complexes: | 6 | |
Complexes with DNA: | 4 | |
Conserved water:
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64 | |
Download: | ||
Sequence alignment: | [ a_74_1_2.fas ] | |
Sequence alignment with secondary structure: | [ a_74_1_2_with_ss.fas ] | |
Superposition in PDB format: | [ a.74.1.2.pdb ] | |
Alignment in MSF: | [ a_74_1_2.msf ] | |
Image of alignment with secondary structure marked: | [ a_74_1_2.PNG ] | |
Water clusters:
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[ a.74.1.2.flat.txt ] | |
[ a.74.1.2.pivot.txt ] | ||
RasMol script: | [ a.74.1.2.spt ] | |
Jmol visualisation of conserved water |
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PDB ID | Chain | Start residue | End residue | Model number | Show |
1vol | A | 113 | 207 | 1 | ON |
1vol | A | 208 | 316 | 2 | ON |
1c9b | A | 110 | 207 | 3 | ON |
1c9b | A | 208 | 316 | 4 | ON |
1c9b | E | 110 | 207 | 5 | ON |
1c9b | E | 208 | 316 | 6 | ON |
1c9b | I | 110 | 207 | 7 | ON |
1c9b | I | 208 | 316 | 8 | ON |
1c9b | M | 110 | 207 | 9 | ON |
1c9b | M | 208 | 316 | 10 | ON |
1c9b | Q | 110 | 207 | 11 | ON |
1c9b | Q | 208 | 316 | 12 | ON |
2phg | A | 112 | 207 | 13 | ON |
2phg | A | 208 | 316 | 14 | ON |
1tfb | N/A | 111 | 207 | 15 | ON |
1tfb | N/A | 208 | 316 | 16 | ON |
1ais | B | 1108 | 1205 | 17 | ON |
1ais | B | 1206 | 1300 | 18 | ON |
1d3u | B | 1100 | 1205 | 19 | ON |
1d3u | B | 1206 | 1300 | 20 | ON |
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