SCOP:
All list
![]() Class:
All alpha proteins
![]() Fold:
DNA-glycosylase
![]() Superfamily:
DNA-glycosylase
![]() Family:
DNA repair glycosylase, 2 C-terminal domains
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protein domain ↓ | species  | PDB ID  | instances  | bonded  |
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3cvs | 4 | 4 |
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1diz | 2 | 2 |
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3cvt | 4 | 4 |
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3cw7 | 4 | 4 |
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3cwa | 4 | 4 |
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3cws | 4 | 4 |
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3cwt | 4 | 4 |
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3cwu | 4 | 4 |
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3d4v | 4 | 4 |
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1n39 | 1 | 1 |
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1yqr | 1 | 1 |
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1n3a | 1 | 1 |
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2i5w | 1 | 1 |
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1ebm | 1 | 1 |
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1n3c | 1 | 1 |
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2nob | 1 | 1 |
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1fn7 | 1 | 1 |
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1m3h | 1 | 1 |
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2noe | 1 | 1 |
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1hu0 | 1 | 1 |
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1m3q | 1 | 1 |
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2nof | 1 | 1 |
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1lwv | 1 | 1 |
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1yqk | 1 | 1 |
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2noh | 1 | 1 |
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1lww | 1 | 1 |
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1yql | 1 | 1 |
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2nol | 1 | 1 |
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1lwy | 1 | 1 |
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1yqm | 1 | 1 |
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2noz | 1 | 1 |
Total: | 31 | 56 | 56 | |
Extended information about type of interaction with DNA: |
General | ||
Interaction class: | H-Bb H-Mj H-Mn L-Bb L-Mj L-Mn |
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Method of 3-D alignment:
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SSM
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Quality of 3-D alignment:
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high | |
Analized family: |
DNA repair glycosylase, 2 C-terminal domains [ a.96.1.3
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Analized complexes: | 26 | |
Complexes with DNA: | 23 | |
Conserved water:
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81 | |
Download: | ||
Sequence alignment: | [ a_96_1_3.fas ] | |
Sequence alignment with secondary structure: | [ a_96_1_3_with_ss.fas ] | |
Superposition in PDB format: | [ a.96.1.3.pdb ] | |
Alignment in MSF: | [ a_96_1_3.msf ] | |
Image of alignment with secondary structure marked: | [ a_96_1_3.PNG ] | |
Water clusters:
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[ a.96.1.3.flat.txt ] | |
[ a.96.1.3.pivot.txt ] | ||
RasMol script: | [ a.96.1.3.spt ] | |
Jmol visualisation of conserved water |
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PDB ID | Chain | Start residue | End residue | Model number | Show |
1mpg | A | 100 | 282 | 1 | ON |
1mpg | B | 100 | 282 | 2 | ON |
1pvs | A | 100 | 282 | 3 | ON |
1pvs | B | 100 | 282 | 4 | ON |
1diz | A | 100 | 282 | 5 | ON |
1diz | B | 100 | 282 | 6 | ON |
1m3q | A | 136 | 325 | 7 | ON |
2noh | A | 136 | 325 | 8 | ON |
1lwy | A | 136 | 325 | 9 | ON |
1ko9 | A | 136 | 323 | 10 | ON |
2nob | A | 136 | 325 | 11 | ON |
1m3h | A | 136 | 325 | 12 | ON |
1ebm | A | 136 | 325 | 13 | ON |
1lww | A | 136 | 325 | 14 | ON |
2noe | A | 136 | 325 | 15 | ON |
1n39 | A | 136 | 325 | 16 | ON |
1hu0 | A | 136 | 325 | 17 | ON |
1n3a | A | 136 | 325 | 18 | ON |
1lwv | A | 136 | 325 | 19 | ON |
2nof | A | 136 | 323 | 20 | ON |
1yqr | A | 136 | 325 | 21 | ON |
2nol | A | 136 | 325 | 22 | ON |
1yqm | A | 136 | 325 | 23 | ON |
2noz | A | 136 | 323 | 24 | ON |
1yqk | A | 136 | 323 | 25 | ON |
1yql | A | 136 | 325 | 26 | ON |
1fn7 | A | 136 | 325 | 27 | ON |
2i5w | A | 136 | 323 | 28 | ON |
1n3c | A | 136 | 325 | 29 | ON |
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