SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA-glycosylase
      Superfamily:
 DNA-glycosylase
        Family:
 DNA repair glycosylase, 2 C-terminal domains
protein domain ↓ species  PDB ID  instances  bonded 
3-Methyladenine DNA glycosylase II (gene alkA or aidA) Escherichia coli [TaxId: 562] 3cwt 4 4
3-Methyladenine DNA glycosylase II (gene alkA or aidA) Escherichia coli [TaxId: 562] 3cwu 4 4
3-Methyladenine DNA glycosylase II (gene alkA or aidA) Escherichia coli [TaxId: 562] 3d4v 4 4
3-Methyladenine DNA glycosylase II (gene alkA or aidA) Escherichia coli [TaxId: 562] 3cvs 4 4
3-Methyladenine DNA glycosylase II (gene alkA or aidA) Escherichia coli [TaxId: 562] 1diz 2 2
3-Methyladenine DNA glycosylase II (gene alkA or aidA) Escherichia coli [TaxId: 562] 3cvt 4 4
3-Methyladenine DNA glycosylase II (gene alkA or aidA) Escherichia coli [TaxId: 562] 3cw7 4 4
3-Methyladenine DNA glycosylase II (gene alkA or aidA) Escherichia coli [TaxId: 562] 3cwa 4 4
3-Methyladenine DNA glycosylase II (gene alkA or aidA) Escherichia coli [TaxId: 562] 3cws 4 4
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 1lwv 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 1yqk 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 2noh 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 1lww 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 1yql 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 2nol 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 1lwy 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 1yqm 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 2noz 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 1n39 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 1yqr 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 1n3a 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 2i5w 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 1ebm 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 1n3c 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 2nob 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 1fn7 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 1m3h 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 2noe 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 1hu0 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 1m3q 1 1
8-oxoguanine glycosylase Human (Homo sapiens) [TaxId: 9606] 2nof 1 1
Total: 31 56 56
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj H-Mn L-Bb L-Mj L-Mn 
Method of 3-D alignment: SSM
Quality of 3-D alignment: high
Analized family: DNA repair glycosylase, 2 C-terminal domains [ a.96.1.3 ]
Analized complexes: 26
Complexes with DNA: 23
Conserved water: 81
Download:
Sequence alignment: [ a_96_1_3.fas ]
Sequence alignment with secondary structure: [ a_96_1_3_with_ss.fas ]
Superposition in PDB format: [ a.96.1.3.pdb ]
Alignment in MSF: [ a_96_1_3.msf ]
Image of alignment with secondary structure marked: [ a_96_1_3.PNG ]
Water clusters: [ a.96.1.3.flat.txt ]
[ a.96.1.3.pivot.txt ]
RasMol script: [ a.96.1.3.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1mpg A 100 282 1
ON
1mpg B 100 282 2
ON
1pvs A 100 282 3
ON
1pvs B 100 282 4
ON
1diz A 100 282 5
ON
1diz B 100 282 6
ON
1m3q A 136 325 7
ON
2noh A 136 325 8
ON
1lwy A 136 325 9
ON
1ko9 A 136 323 10
ON
2nob A 136 325 11
ON
1m3h A 136 325 12
ON
1ebm A 136 325 13
ON
1lww A 136 325 14
ON
2noe A 136 325 15
ON
1n39 A 136 325 16
ON
1hu0 A 136 325 17
ON
1n3a A 136 325 18
ON
1lwv A 136 325 19
ON
2nof A 136 323 20
ON
1yqr A 136 325 21
ON
2nol A 136 325 22
ON
1yqm A 136 325 23
ON
2noz A 136 323 24
ON
1yqk A 136 323 25
ON
1yql A 136 325 26
ON
1fn7 A 136 325 27
ON
2i5w A 136 323 28
ON
1n3c A 136 325 29
ON
© NPIDB team 2003 - 2020

text