SCOP:
 All list
  Class:
 All beta proteins
    Fold:
 Transcription factor IIA (TFIIA), beta-barrel domain
      Superfamily:
 Transcription factor IIA (TFIIA), beta-barrel domain
        Family:
 Transcription factor IIA (TFIIA), beta-barrel domain
protein domain  species  PDB ID  instances  bonded 
Large chain TOA1, C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 1ytf 2 1
Large chain TOA1, C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 1nh2 2 1
Large chain TOA1, C-terminal domain Human (Homo sapiens) [TaxId: 9606] 1nvp 2 1
Small chain TOA2, C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 1rm1 1 0
Total: 4 7 3
    Extended information about type of interaction with DNA:
General
Interaction class:  S-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: middle
Analized family: Transcription factor IIA (TFIIA), beta-barrel domain [ b.56.1.1 ]
Analized complexes: 4
Complexes with DNA: 4
Conserved water: 31
Download:
Sequence alignment: b_56_1_1.fas ]
Sequence alignment with secondary structure: b_56_1_1_with_ss.fas ]
Superposition in PDB format: b.56.1.1.pdb ]
Alignment in MSF: b_56_1_1.msf ]
Image of alignment with secondary structure marked: b_56_1_1.PNG ]
Water clusters: b.56.1.1.flat.txt ]
b.56.1.1.pivot.txt ]
RasMol script: b.56.1.1.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1nh2 C - - 1
ON
1ytf C - - 2
ON
1nvp C - - 3
ON
1nh2 D 55 121 4
ON
1rm1 B 55 120 5
ON
1ytf D 55 119 6
ON
1nvp D 54 99 7
ON
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