SCOP:
 All list
  Class:
 Alpha and beta proteins (a/b)
    Fold:
 Uracil-DNA glycosylase-like
      Superfamily:
 Uracil-DNA glycosylase-like
        Family:
 Uracil-DNA glycosylase
protein domain  species  PDB ID  instances  bonded 
Uracil-DNA glycosylase Herpes simplex virus type 1 [TaxId: 10298] 1lau 1 1
Uracil-DNA glycosylase Human (Homo sapiens) [TaxId: 9606] 1q3f 1 1
Uracil-DNA glycosylase Human (Homo sapiens) [TaxId: 9606] 2oxm 1 1
Uracil-DNA glycosylase Human (Homo sapiens) [TaxId: 9606] 1emh 1 1
Uracil-DNA glycosylase Human (Homo sapiens) [TaxId: 9606] 2oyt 1 1
Uracil-DNA glycosylase Human (Homo sapiens) [TaxId: 9606] 1ssp 1 1
Uracil-DNA glycosylase Human (Homo sapiens) [TaxId: 9606] 1emj 1 1
Uracil-DNA glycosylase Human (Homo sapiens) [TaxId: 9606] 2ssp 1 1
Uracil-DNA glycosylase Human (Homo sapiens) [TaxId: 9606] 4skn 1 1
Total: 9 9 9
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj H-Mn L-Bb L-Mj L-Mn 
Method of 3-D alignment: SSM
Quality of 3-D alignment: high
Analized family: Uracil-DNA glycosylase [ c.18.1.1 ]
Analized complexes: 26
Complexes with DNA: 7
Conserved water: 117
Download:
Sequence alignment: c_18_1_1.fas ]
Sequence alignment with secondary structure: c_18_1_1_with_ss.fas ]
Superposition in PDB format: c.18.1.1.pdb ]
Alignment in MSF: c_18_1_1.msf ]
Image of alignment with secondary structure marked: c_18_1_1.PNG ]
Water clusters: c.18.1.1.flat.txt ]
c.18.1.1.pivot.txt ]
RasMol script: c.18.1.1.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
2hxm A 82 304 1
ON
1akz N/A - - 2
ON
1emh A - - 3
ON
1q3f A - - 4
ON
1ssp E - - 5
ON
1ugh E - - 6
ON
1emj A - - 7
ON
2ssp E - - 8
ON
4skn E - - 9
ON
1okb A - - 10
ON
1okb B - - 11
ON
1lau E - - 12
ON
1udh N/A - - 13
ON
1udg N/A - - 14
ON
1udi E - - 15
ON
3eug A - - 16
ON
4eug A - - 17
ON
2eug A - - 18
ON
1eug A - - 19
ON
5eug A - - 20
ON
1uug A - - 21
ON
1uug C - - 22
ON
2uug A - - 23
ON
2uug B - - 24
ON
1flz A - - 25
ON
1lqg A - - 26
ON
1lqg B - - 27
ON
1lqm A - - 28
ON
1lqm C - - 29
ON
1lqm E - - 30
ON
1lqm G - - 31
ON
1eui A - - 32
ON
1eui B - - 33
ON
1lqj A - - 34
ON
1lqj B - - 35
ON
1lqj C - - 36
ON
1lqj D - - 37
ON
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