SCOP:
 All list
  Class:
 Alpha and beta proteins (a+b)
    Fold:
 His-Me finger endonucleases
      Superfamily:
 His-Me finger endonucleases
        Family:
 HNH-motif
protein domain  species  PDB ID  instances  bonded 
DNase domain of colicin E7 Escherichia coli [TaxId: 562] 1pt3 2 2
DNase domain of colicin E9 Escherichia coli [TaxId: 562] 1v14 4 4
DNase domain of colicin E9 Escherichia coli [TaxId: 562] 1v15 4 4
Total: 3 10 10
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj S-Bb L-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: middle
Analized family: HNH-motif [ d.4.1.1 ]
Analized complexes: 14
Complexes with DNA: 3
Conserved water: 229
Download:
Sequence alignment: d_4_1_1.fas ]
Sequence alignment with secondary structure: d_4_1_1_with_ss.fas ]
Superposition in PDB format: d.4.1.1.pdb ]
Alignment in MSF: d_4_1_1.msf ]
Image of alignment with secondary structure marked: d_4_1_1.PNG ]
Water clusters: d.4.1.1.flat.txt ]
d.4.1.1.pivot.txt ]
RasMol script: d.4.1.1.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
2jb0 B 449 572 1
ON
1mz8 B - - 2
ON
1mz8 D - - 3
ON
1m08 A - - 4
ON
1m08 B - - 5
ON
1ujz B - - 6
ON
7cei B - - 7
ON
1pt3 A - - 8
ON
1pt3 B - - 9
ON
2gyk B 4 133 10
ON
2gyk F 4 133 11
ON
1fr2 B - - 12
ON
1emv B - - 13
ON
1fsj B - - 14
ON
1fsj C - - 15
ON
1fsj D - - 16
ON
1fsj E - - 17
ON
1bxi B - - 18
ON
1v13 A - - 19
ON
1v13 B - - 20
ON
1v15 A - - 21
ON
1v15 B - - 22
ON
1v15 C - - 23
ON
1v15 D - - 24
ON
1v14 A - - 25
ON
1v14 B - - 26
ON
1v14 C - - 27
ON
1v14 D - - 28
ON
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