SCOP:
 All list
  Class:
 Alpha and beta proteins (a+b)
    Fold:
 His-Me finger endonucleases
      Superfamily:
 His-Me finger endonucleases
        Family:
 Intron-encoded homing endonucleases
protein domain  species  PDB ID  instances  bonded 
Intron-encoded homing endonuclease I-HmuI Bacteriophage SP01 [TaxId: 10685] 1u3e 1 1
Intron-encoded homing endonuclease I-PpoI Physarum polycephalum [TaxId: 5791] 1evw 4 4
Intron-encoded homing endonuclease I-PpoI Physarum polycephalum [TaxId: 5791] 1a73 2 2
Intron-encoded homing endonuclease I-PpoI Physarum polycephalum [TaxId: 5791] 1cyq 2 2
Intron-encoded homing endonuclease I-PpoI Physarum polycephalum [TaxId: 5791] 1cz0 2 2
Intron-encoded homing endonuclease I-PpoI Physarum polycephalum [TaxId: 5791] 1ipp 2 2
Intron-encoded homing endonuclease I-PpoI Physarum polycephalum [TaxId: 5791] 1a74 2 2
Total: 7 15 15
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mn S-Bb S-Mj L-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: high
Analized family: Intron-encoded homing endonucleases [ d.4.1.3 ]
Analized complexes: 8
Complexes with DNA: 7
Conserved water: 116
Download:
Sequence alignment: d_4_1_3.fas ]
Sequence alignment with secondary structure: d_4_1_3_with_ss.fas ]
Superposition in PDB format: d.4.1.3.pdb ]
Alignment in MSF: d_4_1_3.msf ]
Image of alignment with secondary structure marked: d_4_1_3.PNG ]
Water clusters: d.4.1.3.flat.txt ]
d.4.1.3.pivot.txt ]
RasMol script: d.4.1.3.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1a73 A - - 1
ON
1a73 B - - 2
ON
1cyq A - - 3
ON
1cyq B - - 4
ON
1evx A - - 5
ON
1evx B - - 6
ON
1cz0 A - - 7
ON
1cz0 B - - 8
ON
1a74 A - - 9
ON
1a74 B - - 10
ON
1ipp A - - 11
ON
1ipp B - - 12
ON
1evw A - - 13
ON
1evw B - - 14
ON
1evw C - - 15
ON
1evw D - - 16
ON
1u3e M 1 105 17
ON
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