SCOP:
 All list
  Class:
 Alpha and beta proteins (a+b)
    Fold:
 Ferredoxin-like
      Superfamily:
 Viral DNA-binding domain
        Family:
 Viral DNA-binding domain
SCOP:
 All list
  Class:
 Alpha and beta proteins (a+b)
    Fold:
 Ferredoxin-like
      Superfamily:
 Viral DNA-binding domain
        Family:
 Viral DNA-binding domain
protein domain  species  PDB ID  instances  bonded 
Epstein barr virus nuclear antigen-1 (ebna1) Epstein-Barr virus [TaxId: 10376] 1b3t 2 2
Papillomavirus-1 E2 protein Bovine papillomavirus type 1 [TaxId: 10559] 2bop 1 1
Papillomavirus-1 E2 protein Human papillomavirus type 18 [TaxId: 333761] 1jj4 2 2
Papillomavirus-1 E2 protein Human papillomavirus type 6a [TaxId: 37122] 2ayb 2 2
Papillomavirus-1 E2 protein Human papillomavirus type 6a [TaxId: 37122] 2ayg 2 2
Total: 5 9 9
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj S-Bb L-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: middle
Analized family: Viral DNA-binding domain [ d.58.8.1 ]
Analized complexes: 16
Complexes with DNA: 5
Conserved water: 163
Download:
Sequence alignment: d_58_8_1.fas ]
Sequence alignment with secondary structure: d_58_8_1_with_ss.fas ]
Superposition in PDB format: d.58.8.1.pdb ]
Alignment in MSF: d_58_8_1.msf ]
Image of alignment with secondary structure marked: d_58_8_1.PNG ]
Water clusters: d.58.8.1.flat.txt ]
d.58.8.1.pivot.txt ]
RasMol script: d.58.8.1.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
2bop A - - 1
ON
1jjh A - - 2
ON
1jjh B - - 3
ON
1jjh C - - 4
ON
1dbd A - - 5
ON
1dbd B - - 6
ON
1a7g E - - 7
ON
1dhm A - - 8
ON
1dhm B - - 9
ON
1by9 N/A - - 10
ON
1zzf A 2 80 11
ON
1zzf B 2 80 12
ON
1r8p A - - 13
ON
1r8p B - - 14
ON
1f9f A - - 15
ON
1f9f B - - 16
ON
1f9f C - - 17
ON
1f9f D - - 18
ON
1jj4 A - - 19
ON
1jj4 B - - 20
ON
1r8h A - - 21
ON
1r8h B - - 22
ON
1r8h C - - 23
ON
1r8h D - - 24
ON
1r8h E - - 25
ON
1r8h F - - 26
ON
2aye A 282 366 27
ON
2aye B 281 366 28
ON
2aye C 281 366 29
ON
2aye D 281 366 30
ON
2aye E 281 366 31
ON
2aye F 282 366 32
ON
2ayg A 281 366 33
ON
2ayg B 281 366 34
ON
2ayb A 281 366 35
ON
2ayb B 281 366 36
ON
1b3t A - - 37
ON
1b3t B - - 38
ON
1vhi A - - 39
ON
1vhi B - - 40
ON
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