SCOP:
 All list
  Class:
 Alpha and beta proteins (a+b)
    Fold:
 SRF-like
      Superfamily:
 SRF-like
        Family:
 SRF-like
SCOP:
 All list
  Class:
 Alpha and beta proteins (a+b)
    Fold:
 SRF-like
      Superfamily:
 SRF-like
        Family:
 SRF-like
protein domain  species  PDB ID  instances  bonded 
MCM1 transcriptional regulator Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 1mnm 2 2
Myocyte enhancer factor Mef2a core Human (Homo sapiens) [TaxId: 9606] 1egw 4 4
Myocyte enhancer factor Mef2a core Human (Homo sapiens) [TaxId: 9606] 1c7u 2 2
Myocyte enhancer factor Mef2b core Human (Homo sapiens) [TaxId: 9606] 1tqe 4 4
Myocyte enhancer factor Mef2b core Human (Homo sapiens) [TaxId: 9606] 1n6j 2 2
Serum response factor (SRF) core Human (Homo sapiens) [TaxId: 9606] 1srs 2 2
Serum response factor (SRF) core Human (Homo sapiens) [TaxId: 9606] 1hbx 4 4
Serum response factor (SRF) core Human (Homo sapiens) [TaxId: 9606] 1k6o 2 2
Total: 8 22 22
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj L-Bb L-Mn 
Method of 3-D alignment: SSM
Quality of 3-D alignment: low
Analized family: SRF-like [ d.88.1.1 ]
Analized complexes: 8
Complexes with DNA: 8
Conserved water: 181
Download:
Sequence alignment: d_88_1_1.fas ]
Sequence alignment with secondary structure: d_88_1_1_with_ss.fas ]
Superposition in PDB format: d.88.1.1.pdb ]
Alignment in MSF: d_88_1_1.msf ]
Image of alignment with secondary structure marked: d_88_1_1.PNG ]
Water clusters: d.88.1.1.flat.txt ]
d.88.1.1.pivot.txt ]
RasMol script: d.88.1.1.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1srs A - - 1
ON
1srs B - - 2
ON
1k6o B - - 3
ON
1k6o C - - 4
ON
1hbx A - - 5
ON
1hbx B - - 6
ON
1hbx D - - 7
ON
1hbx E - - 8
ON
1mnm A - - 9
ON
1mnm B - - 10
ON
1egw A - - 11
ON
1egw B - - 12
ON
1egw C - - 13
ON
1egw D - - 14
ON
1c7u A - - 15
ON
1c7u B - - 16
ON
1n6j A - - 17
ON
1n6j B - - 18
ON
1tqe P - - 19
ON
1tqe Q - - 20
ON
1tqe R - - 21
ON
1tqe S - - 22
ON
© NPIDB team 2003 - 2017

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