SCOP:
 All list
  Class:
 Alpha and beta proteins (a+b)
    Fold:
 Homing endonuclease-like
      Superfamily:
 Homing endonucleases
        Family:
 Intein endonuclease
protein domain  species  PDB ID  instances  bonded 
VMA1-derived endonuclease (VDE) PI-SceI Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 1lws 2 2
VMA1-derived endonuclease (VDE) PI-SceI Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 1lwt 2 2
Total: 2 4 4
    Extended information about type of interaction with DNA:
General
Interaction class:  S-Bb S-Mj L-Bb L-Mj 
Method of 3-D alignment: SSM
Quality of 3-D alignment: low
Analized family: Intein endonuclease [ d.95.2.2 ]
Analized complexes: 8
Complexes with DNA: 2
Conserved water: 88
Download:
Sequence alignment: d_95_2_2.fas ]
Sequence alignment with secondary structure: d_95_2_2_with_ss.fas ]
Superposition in PDB format: d.95.2.2.pdb ]
Alignment in MSF: d_95_2_2.msf ]
Image of alignment with secondary structure marked: d_95_2_2.PNG ]
Water clusters: d.95.2.2.flat.txt ]
d.95.2.2.pivot.txt ]
RasMol script: d.95.2.2.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1jva A 464 581 1
ON
1jva A 582 698 2
ON
1jva B 464 581 3
ON
1jva B 582 698 4
ON
1dfa A 181 298 5
ON
1dfa A 299 415 6
ON
1ef0 A 181 298 7
ON
1ef0 A 299 415 8
ON
1ef0 B 181 298 9
ON
1ef0 B 299 415 10
ON
1vde A 181 298 11
ON
1vde A 299 415 12
ON
1vde B 181 298 13
ON
1vde B 299 415 14
ON
1um2 A 464 581 15
ON
1um2 A 582 698 16
ON
1um2 B 464 581 17
ON
1um2 B 582 698 18
ON
1lwt A 181 298 19
ON
1lwt A 299 415 20
ON
1lws A 181 298 21
ON
1lws A 299 415 22
ON
1dq3 A 129 226 23
ON
1dq3 A 227 335 24
ON
© NPIDB team 2003 - 2019

text