SCOP:
 All list
  Class:
 Alpha and beta proteins (a+b)
    Fold:
 TBP-like
      Superfamily:
 TATA-box binding protein-like
        Family:
 TATA-box binding protein (TBP), C-terminal domain
protein domain ↓ species  PDB ID  instances  bonded 
TATA-box binding protein (TBP), C-terminal domain Thale cress (Arabidopsis thaliana) [TaxId: 3702] 1qn4 4 4
TATA-box binding protein (TBP), C-terminal domain Thale cress (Arabidopsis thaliana) [TaxId: 3702] 1vol 2 2
TATA-box binding protein (TBP), C-terminal domain Human (Homo sapiens) [TaxId: 9606] 1nvp 2 2
TATA-box binding protein (TBP), C-terminal domain Thale cress (Arabidopsis thaliana) [TaxId: 3702] 1qne 4 4
TATA-box binding protein (TBP), C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 1ytb 4 4
TATA-box binding protein (TBP), C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 1rm1 2 2
TATA-box binding protein (TBP), C-terminal domain Human (Homo sapiens) [TaxId: 9606] 1cdw 2 2
TATA-box binding protein (TBP), C-terminal domain Thale cress (Arabidopsis thaliana) [TaxId: 3702] 1qn3 4 4
TATA-box binding protein (TBP), C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 1ytf 2 2
TATA-box binding protein (TBP), C-terminal domain Human (Homo sapiens) [TaxId: 9606] 1tgh 2 2
TATA-box binding protein (TBP), C-terminal domain Thale cress (Arabidopsis thaliana) [TaxId: 3702] 1qn6 4 4
TATA-box binding protein (TBP), C-terminal domain Archaeon Pyrococcus woesei [TaxId: 2262] 1ais 2 2
TATA-box binding protein (TBP), C-terminal domain Human (Homo sapiens) [TaxId: 9606] 1c9b 10 10
TATA-box binding protein (TBP), C-terminal domain Thale cress (Arabidopsis thaliana) [TaxId: 3702] 1qn8 4 4
TATA-box binding protein (TBP), C-terminal domain Archaeon Pyrococcus woesei [TaxId: 2262] 1d3u 2 2
TATA-box binding protein (TBP), C-terminal domain Thale cress (Arabidopsis thaliana) [TaxId: 3702] 1qna 4 4
TATA-box binding protein (TBP), C-terminal domain Thale cress (Arabidopsis thaliana) [TaxId: 3702] 1qn7 4 4
TATA-box binding protein (TBP), C-terminal domain Human (Homo sapiens) [TaxId: 9606] 1jfi 2 2
TATA-box binding protein (TBP), C-terminal domain Thale cress (Arabidopsis thaliana) [TaxId: 3702] 1qn9 4 4
TATA-box binding protein (TBP), C-terminal domain Thale cress (Arabidopsis thaliana) [TaxId: 3702] 1qnb 4 4
TATA-box binding protein (TBP), C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 1ngm 8 8
TATA-box binding protein (TBP), C-terminal domain Thale cress (Arabidopsis thaliana) [TaxId: 3702] 1qn5 4 4
TATA-box binding protein (TBP), C-terminal domain Thale cress (Arabidopsis thaliana) [TaxId: 3702] 1qnc 4 4
TATA-box binding protein (TBP), C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 1nh2 2 2
Total: 24 86 86
    Extended information about type of interaction with DNA:
General
Interaction class:  S-Bb S-Mn L-Bb L-Mn 
Method of 3-D alignment: SSM
Quality of 3-D alignment: middle
Analized family: TATA-box binding protein (TBP), C-terminal domain [ d.129.1.1 ]
Analized complexes: 29
Complexes with DNA: 24
Conserved water: 246
Download:
Sequence alignment: [ d_129_1_1.fas ]
Sequence alignment with secondary structure: [ d_129_1_1_with_ss.fas ]
Superposition in PDB format: [ d.129.1.1.pdb ]
Alignment in MSF: [ d_129_1_1.msf ]
Image of alignment with secondary structure marked: [ d_129_1_1.PNG ]
Water clusters: [ d.129.1.1.flat.txt ]
[ d.129.1.1.pivot.txt ]
RasMol script: [ d.129.1.1.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1cdw A 155 252 1
ON
1cdw A 253 333 2
ON
1nvp A 159 252 3
ON
1nvp A 253 338 4
ON
1jfi C 356 456 5
ON
1jfi C 457 538 6
ON
1c9b B 158 252 7
ON
1c9b B 253 337 8
ON
1c9b F 158 252 9
ON
1c9b F 253 337 10
ON
1c9b J 158 252 11
ON
1c9b J 253 337 12
ON
1c9b N 158 252 13
ON
1c9b N 253 337 14
ON
1c9b R 158 252 15
ON
1c9b R 253 337 16
ON
1tgh A 155 252 17
ON
1tgh A 253 334 18
ON
1qna A 17 115 19
ON
1qna A 116 198 20
ON
1qna B 12 115 21
ON
1qna B 116 197 22
ON
1qn4 A 16 115 23
ON
1qn4 A 116 198 24
ON
1qn4 B 12 115 25
ON
1qn4 B 116 198 26
ON
1qn5 A 16 115 27
ON
1qn5 A 116 198 28
ON
1qn5 B 12 115 29
ON
1qn5 B 116 197 30
ON
1qn9 A 16 115 31
ON
1qn9 A 116 198 32
ON
1qn9 B 12 115 33
ON
1qn9 B 116 197 34
ON
1qne A 12 115 35
ON
1qne A 116 198 36
ON
1qne B 11 115 37
ON
1qne B 116 198 38
ON
1vok A 7 115 39
ON
1vok A 116 198 40
ON
1vok B 12 115 41
ON
1vok B 116 199 42
ON
1qn3 A 16 115 43
ON
1qn3 A 116 198 44
ON
1qn3 B 12 115 45
ON
1qn3 B 116 198 46
ON
1qn8 A 16 115 47
ON
1qn8 A 116 198 48
ON
1qn8 B 12 115 49
ON
1qn8 B 116 198 50
ON
1qn6 A 15 115 51
ON
1qn6 A 116 198 52
ON
1qn6 B 12 115 53
ON
1qn6 B 116 198 54
ON
1qnb A 16 115 55
ON
1qnb A 116 198 56
ON
1qnb B 12 115 57
ON
1qnb B 116 198 58
ON
1qn7 A 13 115 59
ON
1qn7 A 116 198 60
ON
1qn7 B 12 115 61
ON
1qn7 B 116 197 62
ON
1qnc A 16 115 63
ON
1qnc A 116 198 64
ON
1qnc B 12 115 65
ON
1qnc B 116 198 66
ON
1vol B 12 115 67
ON
1vol B 116 198 68
ON
1nh2 A 61 155 69
ON
1nh2 A 156 240 70
ON
1ytb A 61 155 71
ON
1ytb A 156 240 72
ON
1ytb B 61 155 73
ON
1ytb B 156 240 74
ON
1rm1 A 61 155 75
ON
1rm1 A 156 240 76
ON
1ytf A 61 155 77
ON
1ytf A 156 240 78
ON
1tbp A 61 155 79
ON
1tbp A 156 240 80
ON
1tbp B 61 155 81
ON
1tbp B 156 240 82
ON
1ngm A 61 155 83
ON
1ngm A 156 240 84
ON
1ngm E 61 155 85
ON
1ngm E 156 240 86
ON
1ngm I 61 155 87
ON
1ngm I 156 240 88
ON
1ngm M 61 155 89
ON
1ngm M 156 240 90
ON
1tba B 61 155 91
ON
1tba B 156 240 92
ON
1ais A 1 92 93
ON
1ais A 93 181 94
ON
1d3u A 1 92 95
ON
1d3u A 93 181 96
ON
1pcz A 2 92 97
ON
1pcz A 93 184 98
ON
1pcz B 2 92 99
ON
1pcz B 93 184 100
ON
1mp9 A 5 96 101
ON
1mp9 A 97 197 102
ON
1mp9 B 3 96 103
ON
1mp9 B 97 191 104
ON
© NPIDB team 2003 - 2019

text