SCOP:
 All list
  Class:
 Small proteins
    Fold:
 Glucocorticoid receptor-like (DNA-binding domain)
      Superfamily:
 Glucocorticoid receptor-like (DNA-binding domain)
        Family:
 Nuclear receptor
SCOP:
 All list
  Class:
 Small proteins
    Fold:
 Glucocorticoid receptor-like (DNA-binding domain)
      Superfamily:
 Glucocorticoid receptor-like (DNA-binding domain)
        Family:
 Nuclear receptor
protein domain  species  PDB ID  instances  bonded 
Androgen receptor Rat (Rattus norvegicus) [TaxId: 10116] 1r4i 2 2
Estrogen receptor DNA-binding domain Human and chicken (Homo sapiens) and (Gallus gallus) [TaxId: 9606] 1hcq 4 4
Glucocorticoid receptor DNA-binding domain Rat (Rattus norvegicus) [TaxId: 10116] 1r4o 2 2
Glucocorticoid receptor DNA-binding domain Rat (Rattus norvegicus) [TaxId: 10116] 1r4r 2 2
Glucocorticoid receptor DNA-binding domain Rat (Rattus norvegicus) [TaxId: 10116] 1lat 2 2
Glucocorticoid receptor DNA-binding domain Rat (Rattus norvegicus) [TaxId: 10116] 1glu 2 2
Orphan nuclear receptor NGFI-B DNA-binding domain Rat (Rattus norvegicus) [TaxId: 10116] 1cit 1 1
Orphan nuclear receptor reverb DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 1ga5 4 4
Orphan nuclear receptor reverb DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 1hlz 2 2
Orphan nuclear receptor reverb DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 1a6y 2 2
Retinoid X receptor (RXR-alpha) DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 1dsz 2 2
Retinoid X receptor (RXR-alpha) DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 2nll 2 2
Retinoid X receptor (RXR-alpha) DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 1by4 4 4
Retinoid X receptor (RXR-alpha) DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 1ynw 2 2
Retinoid X receptor (RXR-alpha) DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 2han 2 2
Retinoid X receptor (RXR-alpha) DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 1r0n 2 2
Steroid hormone receptor Err2 DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 1lo1 1 1
Ultraspiracle protein Fruit fly (Drosophila melanogaster) [TaxId: 7227] 1r0o 2 2
Vitamin D3 receptor, VDR, DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 1kb2 2 2
Vitamin D3 receptor, VDR, DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 1kb4 2 2
Vitamin D3 receptor, VDR, DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 1kb6 2 2
Total: 21 46 46
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj L-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: middle
Analized family: Nuclear receptor [ g.39.1.2 ]
Analized complexes: 27
Complexes with DNA: 21
Conserved water: 293
Download:
Sequence alignment: g_39_1_2.fas ]
Sequence alignment with secondary structure: g_39_1_2_with_ss.fas ]
Superposition in PDB format: g.39.1.2.pdb ]
Alignment in MSF: g_39_1_2.msf ]
Image of alignment with secondary structure marked: g_39_1_2.PNG ]
Water clusters: g.39.1.2.flat.txt ]
g.39.1.2.pivot.txt ]
RasMol script: g.39.1.2.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1dsz B - - 1
ON
2han A 7 72 2
ON
2nll A - - 3
ON
1by4 A - - 4
ON
1by4 B - - 5
ON
1by4 C - - 6
ON
1by4 D - - 7
ON
1r0n A - - 8
ON
1ynw B 235 300 9
ON
1rxr N/A - - 10
ON
2nll B - - 11
ON
1cit A - - 12
ON
1hcq A - - 13
ON
1hcq B - - 14
ON
1hcq E - - 15
ON
1hcq F - - 16
ON
1hcp N/A - - 17
ON
1lo1 A - - 18
ON
2han B 5 87 19
ON
1r0o B - - 20
ON
1r0n B - - 21
ON
1r0o A - - 22
ON
1lat A - - 23
ON
1lat B - - 24
ON
1r4o A - - 25
ON
1r4o B - - 26
ON
1glu A - - 27
ON
1glu B - - 28
ON
1r4r A - - 29
ON
1r4r B - - 30
ON
1gdc N/A - - 31
ON
1rgd N/A - - 32
ON
2gda N/A - - 33
ON
1dsz A - - 34
ON
1hra N/A - - 35
ON
1a6y A - - 36
ON
1a6y B - - 37
ON
1ga5 A - - 38
ON
1ga5 B - - 39
ON
1ga5 E - - 40
ON
1ga5 F - - 41
ON
1hlz A - - 42
ON
1hlz B - - 43
ON
1kb2 A - - 44
ON
1kb2 B - - 45
ON
1kb4 A - - 46
ON
1kb4 B - - 47
ON
1kb6 A - - 48
ON
1kb6 B - - 49
ON
1r4i A - - 50
ON
1r4i B - - 51
ON
© NPIDB team 2003 - 2017

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