SCOP:
 All list
  Class:
 All beta proteins
    Fold:
 Common fold of diphtheria toxin/transcription factors/cytochrome f
      Superfamily:
 p53-like transcription factors
        Family:
 p53 DNA-binding domain-like
protein domain  species  PDB ID  instances  bonded 
p53 tumor suppressor, DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 2ady 2 2
p53 tumor suppressor, DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 2ahi 4 4
p53 tumor suppressor, DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 2ata 4 4
p53 tumor suppressor, DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 1tup 3 3
p53 tumor suppressor, DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 1tsr 3 3
p53 tumor suppressor, DNA-binding domain Human (Homo sapiens) [TaxId: 9606] 2ac0 4 4
Total: 6 20 20
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj S-Bb S-Mj L-Bb L-Mj L-Mn 
Method of 3-D alignment: SSM
Quality of 3-D alignment: middle
Analized family: p53 DNA-binding domain-like [ b.2.5.2 ]
Analized complexes: 15
Complexes with DNA: 6
Conserved water: 198
Download:
Sequence alignment: b_2_5_2.fas ]
Sequence alignment with secondary structure: b_2_5_2_with_ss.fas ]
Superposition in PDB format: b.2.5.2.pdb ]
Alignment in MSF: b_2_5_2.msf ]
Image of alignment with secondary structure marked: b_2_5_2.PNG ]
Water clusters: b.2.5.2.flat.txt ]
b.2.5.2.pivot.txt ]
RasMol script: b.2.5.2.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
2ac0 A 96 289 1
ON
2ac0 B 96 289 2
ON
2ac0 C 96 289 3
ON
2ac0 D 96 289 4
ON
2ahi A 96 289 5
ON
2ahi B 96 289 6
ON
2ahi C 96 288 7
ON
2ahi D 96 289 8
ON
1uol A - - 9
ON
1uol B - - 10
ON
2ata A 96 289 11
ON
2ata B 96 289 12
ON
2ata C 96 289 13
ON
2ata D 96 289 14
ON
2ocj A 96 289 15
ON
2ocj B 96 289 16
ON
2ocj C 96 289 17
ON
2ocj D 96 289 18
ON
1ycs A - - 19
ON
1tup A - - 20
ON
1tup B - - 21
ON
1tup C - - 22
ON
1tsr A - - 23
ON
1tsr B - - 24
ON
1tsr C - - 25
ON
2ady A 96 289 26
ON
2ady B 96 289 27
ON
1kzy A - - 28
ON
1kzy B - - 29
ON
1gzh A - - 30
ON
1gzh C - - 31
ON
2h1l M 96 289 32
ON
2h1l N 96 289 33
ON
2h1l O 96 289 34
ON
2h1l P 96 289 35
ON
2h1l Q 96 289 36
ON
2h1l R 96 289 37
ON
2h1l S 96 289 38
ON
2h1l T 96 289 39
ON
2h1l U 96 289 40
ON
2h1l V 96 289 41
ON
2h1l W 96 289 42
ON
2h1l X 96 289 43
ON
2fej A 96 290 44
ON
1hu8 A - - 45
ON
1hu8 B - - 46
ON
1hu8 C - - 47
ON
1t4w A - - 48
ON
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