SCOP:
 All list
  Class:
 All beta proteins
    Fold:
 N-terminal domain of MutM-like DNA repair proteins
      Superfamily:
 N-terminal domain of MutM-like DNA repair proteins
        Family:
 N-terminal domain of MutM-like DNA repair proteins
SCOP:
 All list
  Class:
 All beta proteins
    Fold:
 N-terminal domain of MutM-like DNA repair proteins
      Superfamily:
 N-terminal domain of MutM-like DNA repair proteins
        Family:
 N-terminal domain of MutM-like DNA repair proteins
protein domain  species  PDB ID  instances  bonded 
DNA repair protein MutM (Fpg) Lactococcus lactis [TaxId: 1358] 1tdz 1 1
DNA repair protein MutM (Fpg) Escherichia coli [TaxId: 562] 1k82 4 4
DNA repair protein MutM (Fpg) Lactococcus lactis [TaxId: 1358] 1xc8 1 1
DNA repair protein MutM (Fpg) Lactococcus lactis [TaxId: 1358] 1kfv 2 2
DNA repair protein MutM (Fpg) Lactococcus lactis [TaxId: 1358] 1nnj 1 1
DNA repair protein MutM (Fpg) Bacillus stearothermophilus [TaxId: 1422] 2f5q 1 1
DNA repair protein MutM (Fpg) Bacillus stearothermophilus [TaxId: 1422] 1l1t 1 1
DNA repair protein MutM (Fpg) Bacillus stearothermophilus [TaxId: 1422] 1r2y 1 1
DNA repair protein MutM (Fpg) Bacillus stearothermophilus [TaxId: 1422] 2f5s 1 1
DNA repair protein MutM (Fpg) Bacillus stearothermophilus [TaxId: 1422] 1l1z 1 1
DNA repair protein MutM (Fpg) Bacillus stearothermophilus [TaxId: 1422] 1r2z 1 1
DNA repair protein MutM (Fpg) Bacillus stearothermophilus [TaxId: 1422] 1l2b 1 1
DNA repair protein MutM (Fpg) Lactococcus lactis [TaxId: 1358] 1pji 1 1
DNA repair protein MutM (Fpg) Bacillus stearothermophilus [TaxId: 1422] 1l2c 1 1
DNA repair protein MutM (Fpg) Lactococcus lactis [TaxId: 1358] 1pjj 1 1
DNA repair protein MutM (Fpg) Bacillus stearothermophilus [TaxId: 1422] 1l2d 1 1
DNA repair protein MutM (Fpg) Lactococcus lactis [TaxId: 1358] 1pm5 1 1
Endonuclease VIII Escherichia coli [TaxId: 562] 1k3w 1 1
Endonuclease VIII Escherichia coli [TaxId: 562] 1k3x 1 1
Endonuclease VIII Escherichia coli [TaxId: 562] 2ea0 1 1
Endonuclease VIII Escherichia coli [TaxId: 562] 2opf 1 1
Endonuclease VIII Escherichia coli [TaxId: 562] 2oq4 2 2
Total: 22 27 27
    Extended information about type of interaction with DNA:
General
Interaction class:  S-Bb L-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: middle
Analized family: N-terminal domain of MutM-like DNA repair proteins [ b.113.1.1 ]
Analized complexes: 24
Complexes with DNA: 19
Conserved water: 115
Download:
Sequence alignment: b_113_1_1.fas ]
Sequence alignment with secondary structure: b_113_1_1_with_ss.fas ]
Superposition in PDB format: b.113.1.1.pdb ]
Alignment in MSF: b_113_1_1.msf ]
Image of alignment with secondary structure marked: b_113_1_1.PNG ]
Water clusters: b.113.1.1.flat.txt ]
b.113.1.1.pivot.txt ]
RasMol script: b.113.1.1.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1ee8 A 1 121 1
ON
1ee8 B 1 121 2
ON
1r2z A 2 134 3
ON
1l1z A 2 134 4
ON
1l1t A 2 134 5
ON
1l2d A 2 134 6
ON
1l2c A 2 134 7
ON
1r2y A 2 134 8
ON
2f5q A 2 134 9
ON
1l2b A 2 134 10
ON
2f5s A 2 134 11
ON
1k82 A 1 128 12
ON
1k82 B 1 128 13
ON
1k82 C 1 128 14
ON
1k82 D 1 128 15
ON
1tdz A 2 131 16
ON
1pjj A 1 131 17
ON
1xc8 A 2 131 18
ON
1pji A 1 131 19
ON
1pm5 A 1 131 20
ON
1nnj A 1 131 21
ON
1kfv A 1 131 22
ON
1kfv B 1 131 23
ON
1k3x A 1 124 24
ON
1k3w A 1 124 25
ON
1q3b A 1 124 26
ON
1q3c A 2 124 27
ON
1q39 A 4 124 28
ON
1tdh A 2 131 29
ON
© NPIDB team 2003 - 2017

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