SCOP:
 All list
  Class:
 All beta proteins
    Fold:
 Common fold of diphtheria toxin/transcription factors/cytochrome f
      Superfamily:
 p53-like transcription factors
        Family:
 DNA-binding domain from NDT80
protein domain  species  PDB ID  instances  bonded 
DNA-binding domain from NDT80 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 2eux 1 1
DNA-binding domain from NDT80 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 2euz 1 1
DNA-binding domain from NDT80 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 2evf 1 1
DNA-binding domain from NDT80 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 2evg 1 1
DNA-binding domain from NDT80 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 1mnn 1 1
DNA-binding domain from NDT80 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 2evh 1 1
DNA-binding domain from NDT80 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 2etw 1 1
DNA-binding domain from NDT80 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 2evi 1 1
DNA-binding domain from NDT80 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 2euv 1 1
DNA-binding domain from NDT80 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 2evj 1 1
DNA-binding domain from NDT80 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 2euw 1 1
Total: 11 11 11
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj S-Bb L-Bb L-Mj L-Mn 
Method of 3-D alignment: SSM
Quality of 3-D alignment: high
Analized family: DNA-binding domain from NDT80 [ b.2.5.7 ]
Analized complexes: 14
Complexes with DNA: 11
Conserved water: 86
Download:
Sequence alignment: b_2_5_7.fas ]
Sequence alignment with secondary structure: b_2_5_7_with_ss.fas ]
Superposition in PDB format: b.2.5.7.pdb ]
Alignment in MSF: b_2_5_7.msf ]
Image of alignment with secondary structure marked: b_2_5_7.PNG ]
Water clusters: b.2.5.7.flat.txt ]
b.2.5.7.pivot.txt ]
RasMol script: b.2.5.7.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1mnn A - - 1
ON
2evf A 33 335 2
ON
2evg A 33 335 3
ON
2eux A 33 335 4
ON
2euz A 33 335 5
ON
2euw A 33 335 6
ON
2etw A 33 335 7
ON
2evi A 33 335 8
ON
2evj A 33 335 9
ON
2euv A 33 335 10
ON
2evh A 33 335 11
ON
1mn4 A - - 12
ON
1m6u A - - 13
ON
1m6u B - - 14
ON
1m7u A - - 15
ON
1m7u B - - 16
ON
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