General information
PDB ID 1A3Q
Title HUMAN NF-KAPPA-B P52 BOUND TO DNA
PDB header TRANSCRIPTION/DNA
Date 1998-01-23
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.1
Kind dna
Organism HOMO SAPIENS
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CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1a3q.pdb AB CD 0
Biounits:
1a3q.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RHD_DNA_bind Domain Q00653_40-220 8.6e-62 1 CL0073 A 40 220 CD  S-Bb S-Mj L-Bb L-Mj 
RHD_dimer Domain Q00653_229-327 1.6e-38 1 CL0159 A 229 327 C  L-Bb 
RHD_DNA_bind Domain Q00653_40-220 8.6e-62 1 CL0073 B 40 220 CD  H-Bb H-Mj L-Bb L-Mj 
RHD_dimer Domain Q00653_229-327 1.6e-38 1 CL0159 B 229 327 D  S-Bb L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: Immunoglobulin-like beta-sandwich
    Superfamily: E set domains
      Family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
p52 subunit of NF-kappa B (NFKB) A 227 327 C  L-Bb 
Class: All beta proteins
  Fold: Immunoglobulin-like beta-sandwich
    Superfamily: E set domains
      Family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
p52 subunit of NF-kappa B (NFKB) B 227 327 D  L-Bb 
Class: All beta proteins
  Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
    Superfamily: p53-like transcription factors
      Family: Rel/Dorsal transcription factors, DNA-binding domain
p52 subunit of NF-kappa B (NFKB), N-terminal domain A 37 226 CD  S-Bb S-Mj L-Bb L-Mj 
Class: All beta proteins
  Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
    Superfamily: p53-like transcription factors
      Family: Rel/Dorsal transcription factors, DNA-binding domain
p52 subunit of NF-kappa B (NFKB), N-terminal domain B 37 226 CD  H-Bb H-Mj L-Bb L-Mj 
GO terms
Protein chains: GO type: GO description:
A/B=37-327 C Bcl3/NF-kappaB2 complex
A/B=37-327 C cytoplasm
A/B=37-327 C cytosol
A/B=37-327 C host cell nucleus
A/B=37-327 C nuclear chromatin
A/B=37-327 C nucleoplasm
A/B=37-327 C nucleus
A/B=37-327 F DNA-binding transcription activator activity, RNA polymerase II-specific
A/B=37-327 F DNA-binding transcription factor activity
A/B=37-327 F DNA-binding transcription factor activity, RNA polymerase II-specific
A/B=37-327 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/B=37-327 F sequence-specific double-stranded DNA binding
A/B=37-327 P aging
A/B=37-327 P extracellular matrix organization
A/B=37-327 P follicular dendritic cell differentiation
A/B=37-327 P germinal center formation
A/B=37-327 P NIK/NF-kappaB signaling
A/B=37-327 P positive regulation of NF-kappaB transcription factor activity
A/B=37-327 P positive regulation of transcription by RNA polymerase II
A/B=37-327 P positive regulation of type I interferon production
A/B=37-327 P regulation of transcription, DNA-templated
A/B=37-327 P response to cytokine
A/B=37-327 P response to lipopolysaccharide
A/B=37-327 P rhythmic process
A/B=37-327 P spleen development
Sequences
Download file with secondary structure created by Stride  
1a3q.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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