General information
PDB ID 1A6Y
Title REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX
PDB header TRANSCRIPTION/DNA
Date 1998-03-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.3
Kind dna
Organism HOMO SAPIENS
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CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1a6y.pdb AB CD 0
Biounits:
1a6y.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-C4 Domain P20393_130-200 5.8e-33 1 CL0167 A 99 168 CD  H-Bb H-Mj S-Bb S-Mj L-Bb 
zf-C4 Domain P20393_130-200 7.6e-33 1 CL0167 B 99 168 CD  H-Bb H-Mj S-Bb L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: Nuclear receptor
Orphan nuclear receptor reverb DNA-binding domain A N/A N/A CD  H-Bb H-Mj S-Bb S-Mj L-Bb 
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: Nuclear receptor
Orphan nuclear receptor reverb DNA-binding domain B N/A N/A CD  H-Bb H-Mj S-Bb L-Bb 
GO terms
Protein chains: GO type: GO description:
A/B=123-216 C cytoplasm
A/B=123-216 C dendrite
A/B=123-216 C dendritic spine
A/B=123-216 C nuclear body
A/B=123-216 C nuclear chromatin
A/B=123-216 C nucleoplasm
A/B=123-216 C nucleus
A/B=123-216 C RNA polymerase II transcription regulator complex
A/B=123-216 F DNA-binding transcription factor activity, RNA polymerase II-specific
A/B=123-216 F DNA-binding transcription repressor activity, RNA polymerase II-specific
A/B=123-216 F E-box binding
A/B=123-216 F heme binding
A/B=123-216 F nuclear receptor activity
A/B=123-216 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/B=123-216 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
A/B=123-216 F sequence-specific double-stranded DNA binding
A/B=123-216 F signaling receptor activity
A/B=123-216 F steroid hormone receptor activity
A/B=123-216 F transcription corepressor binding
A/B=123-216 F transcription factor binding
A/B=123-216 F transcription regulatory region sequence-specific DNA binding
A/B=123-216 F zinc ion binding
A/B=123-216 P cell differentiation
A/B=123-216 P cellular glucose homeostasis
A/B=123-216 P cellular response to interleukin-1
A/B=123-216 P cellular response to lipopolysaccharide
A/B=123-216 P cellular response to tumor necrosis factor
A/B=123-216 P cholesterol homeostasis
A/B=123-216 P circadian regulation of gene expression
A/B=123-216 P circadian rhythm
A/B=123-216 P circadian temperature homeostasis
A/B=123-216 P glycogen biosynthetic process
A/B=123-216 P hormone-mediated signaling pathway
A/B=123-216 P negative regulation of astrocyte activation
A/B=123-216 P negative regulation of cold-induced thermogenesis
A/B=123-216 P negative regulation of I-kappaB kinase/NF-kappaB signaling
A/B=123-216 P negative regulation of inflammatory response
A/B=123-216 P negative regulation of microglial cell activation
A/B=123-216 P negative regulation of neuroinflammatory response
A/B=123-216 P negative regulation of receptor biosynthetic process
A/B=123-216 P negative regulation of toll-like receptor 4 signaling pathway
A/B=123-216 P negative regulation of transcription by RNA polymerase II
A/B=123-216 P negative regulation of transcription, DNA-templated
A/B=123-216 P positive regulation of bile acid biosynthetic process
A/B=123-216 P positive regulation of transcription by RNA polymerase II
A/B=123-216 P positive regulation of transcription, DNA-templated
A/B=123-216 P proteasomal protein catabolic process
A/B=123-216 P protein destabilization
A/B=123-216 P regulation of circadian rhythm
A/B=123-216 P regulation of circadian sleep/wake cycle
A/B=123-216 P regulation of fat cell differentiation
A/B=123-216 P regulation of insulin secretion involved in cellular response to glucose stimulus
A/B=123-216 P regulation of lipid metabolic process
A/B=123-216 P regulation of type B pancreatic cell proliferation
A/B=123-216 P response to leptin
A/B=123-216 P transcription initiation from RNA polymerase II promoter
Sequences
Download file with secondary structure created by Stride  
1a6y.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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