General information
PDB ID 1CIT
Title DNA-BINDING MECHANISM OF THE MONOMERIC ORPHAN NUCLEAR RECEPTOR NGFI-B
PDB header TRANSCRIPTION/DNA
Date 1999-04-05
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.7
Kind dna
Organism RATTUS NORVEGICUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1cit.pdb A BC 0
Biounits:
1cit.pdb1.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-C4 Domain P22829_264-333 4e-32 1 CL0167 A 230 299 BC  H-Bb H-Mj S-Bb S-Mj L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Small proteins
  Fold: Glucocorticoid receptor-like (DNA-binding domain)
    Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
      Family: Nuclear receptor
Orphan nuclear receptor NGFI-B DNA-binding domain A N/A N/A BC  H-Bb H-Mj S-Bb S-Mj L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
A=264-352 C cytosol
A=264-352 C mitochondrion
A=264-352 C nuclear membrane
A=264-352 C nucleoplasm
A=264-352 C nucleus
A=264-352 C transcription regulator complex
A=264-352 F DNA binding
A=264-352 F DNA-binding transcription activator activity, RNA polymerase II-specific
A=264-352 F glucocorticoid receptor binding
A=264-352 F identical protein binding
A=264-352 F nuclear receptor activity
A=264-352 F protein heterodimerization activity
A=264-352 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A=264-352 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
A=264-352 F sequence-specific DNA binding
A=264-352 F transcription factor binding
A=264-352 F zinc ion binding
A=264-352 P apoptotic process
A=264-352 P cell migration involved in sprouting angiogenesis
A=264-352 P cellular response to corticotropin-releasing hormone stimulus
A=264-352 P cellular response to fibroblast growth factor stimulus
A=264-352 P cellular response to organic substance
A=264-352 P cellular response to vascular endothelial growth factor stimulus
A=264-352 P endothelial cell chemotaxis
A=264-352 P fat cell differentiation
A=264-352 P negative regulation of cell cycle
A=264-352 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
A=264-352 P positive regulation of apoptotic process
A=264-352 P positive regulation of endothelial cell proliferation
A=264-352 P positive regulation of transcription by RNA polymerase II
A=264-352 P positive regulation of transcription, DNA-templated
A=264-352 P regulation of type B pancreatic cell proliferation
A=264-352 P response to electrical stimulus
A=264-352 P response to lipopolysaccharide
A=264-352 P skeletal muscle cell differentiation
Sequences
Download file with secondary structure created by Stride  
1cit.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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