General information
PDB ID 1D3U
Title TATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/BRE+TATA- BOX COMPLEX FROM PYROCOCCUS WOESEI
PDB header GENE REGULATION/DNA
Date 1999-10-01
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.4
Kind dna
Organism PYROCOCCUS WOESEI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1d3u.pdb AB CD 0
Biounits:
1d3u.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TBP Domain P62001_99-181 2.7e-27 1 CL0407 A 99 181 CD  S-Bb S-Mn L-Bb L-Mn 
TBP Domain P62001_8-90 3.4e-26 1 CL0407 A 8 90 CD  S-Bb S-Mj S-Mn L-Bb 
TFIIB Domain P61999_201-292 4.9e-30 1 CL0065 B 1201 1292 CD  H-Bb H-Mj L-Bb L-Mj 
TFIIB Domain P61999_108-196 4.3e-23 1 CL0065 B 1105 1196 CD  H-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: Cyclin-like
    Superfamily: Cyclin-like
      Family: Transcription factor IIB (TFIIB), core domain
Transcription factor IIB (TFIIB), core domain B 1100 1205 CD  H-Bb 
Class: All alpha proteins
  Fold: Cyclin-like
    Superfamily: Cyclin-like
      Family: Transcription factor IIB (TFIIB), core domain
Transcription factor IIB (TFIIB), core domain B 1206 1300 CD  H-Bb H-Mj L-Bb L-Mj 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain A 1 92 CD  S-Bb S-Mn L-Bb 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain A 93 181 CD  S-Bb S-Mn L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
A=1-181 F DNA binding
A=1-181 F DNA-binding transcription factor activity
A=1-181 P DNA-templated transcription, initiation
B=100-300 F DNA-binding transcription factor activity
B=100-300 F TBP-class protein binding
B=100-300 F zinc ion binding
B=100-300 P transcription preinitiation complex assembly
Sequences
Download file with secondary structure created by Stride  
1d3u.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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