General information
PDB ID 1D5Y
Title CRYSTAL STRUCTURE OF THE E. COLI ROB TRANSCRIPTION FACTOR IN COMPLEX WITH DNA
PDB header TRANSCRIPTION/DNA
Date 1999-10-12
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.7
Kind dna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1d5y.pdb ADCB MNOP 0
Biounits:
1d5y.pdb1.pdb AB MN 1
1d5y.pdb2.pdb DC OP 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
GyrI-like Domain P0ACI0_126-288 7e-24 1 CL0319 A 126 288   
HTH_18 Domain P0ACI0_27-106 1.4e-18 1 CL0123 A 27 106 MN  H-Bb H-Mj L-Bb 
GyrI-like Domain P0ACI0_126-288 7e-24 1 CL0319 B 126 288   
HTH_18 Domain P0ACI0_27-106 1.4e-18 1 CL0123 B 27 106 NM  H-Bb 
GyrI-like Domain P0ACI0_126-288 7e-24 1 CL0319 C 126 288   
HTH_18 Domain P0ACI0_27-106 1.4e-18 1 CL0123 C 27 106 OP  H-Bb H-Mj L-Bb 
GyrI-like Domain P0ACI0_126-288 7e-24 1 CL0319 D 126 288   
HTH_18 Domain P0ACI0_27-106 1.4e-18 1 CL0123 D 27 106 OP  H-Bb H-Mj 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: AraC type transcriptional activator
Rob transcription factor, N-terminal domain A 3 56 MN  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: AraC type transcriptional activator
Rob transcription factor, N-terminal domain B 3 56 NM  H-Bb L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: AraC type transcriptional activator
Rob transcription factor, N-terminal domain A 57 121 M  H-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: AraC type transcriptional activator
Rob transcription factor, N-terminal domain B 57 121 -
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: AraC type transcriptional activator
Rob transcription factor, N-terminal domain C 3 56 OP  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: AraC type transcriptional activator
Rob transcription factor, N-terminal domain D 3 56 PO  H-Bb L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: AraC type transcriptional activator
Rob transcription factor, N-terminal domain C 57 121 O  H-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: AraC type transcriptional activator
Rob transcription factor, N-terminal domain D 57 121 O  H-Bb 
Class: Alpha and beta proteins (a+b)
  Fold: Probable bacterial effector-binding domain
    Superfamily: Probable bacterial effector-binding domain
      Family: Rob transcription factor, C-terminal domain
Rob transcription factor, C-terminal domain A 122 294 -
Class: Alpha and beta proteins (a+b)
  Fold: Probable bacterial effector-binding domain
    Superfamily: Probable bacterial effector-binding domain
      Family: Rob transcription factor, C-terminal domain
Rob transcription factor, C-terminal domain B 122 294 -
Class: Alpha and beta proteins (a+b)
  Fold: Probable bacterial effector-binding domain
    Superfamily: Probable bacterial effector-binding domain
      Family: Rob transcription factor, C-terminal domain
Rob transcription factor, C-terminal domain C 122 294 -
Class: Alpha and beta proteins (a+b)
  Fold: Probable bacterial effector-binding domain
    Superfamily: Probable bacterial effector-binding domain
      Family: Rob transcription factor, C-terminal domain
Rob transcription factor, C-terminal domain D 122 294 -
GO terms
Protein chains: GO type: GO description:
A/B/C/D=3-289 C cytosol
A/B/C/D=3-289 F DNA-binding transcription factor activity
A/B/C/D=3-289 F sequence-specific DNA binding
Sequences
Download file with secondary structure created by Stride  
1d5y.pdb1.pdb:   [ download sequences in FASTA format ]
M (dna): 
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N (dna): 
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A (protein): 
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B (protein): 
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1d5y.pdb2.pdb:   [ download sequences in FASTA format ]
O (dna): 
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P (dna): 
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C (protein): 
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D (protein): 
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