General information
PDB ID 1EQZ
Title X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE AT 2.5 A RESOLUTION
PDB header STRUCTURAL PROTEIN/DNA
Date 2000-04-06
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.5
Kind dna
Organism GALLUS GALLUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1eqz.pdb ABCDEFGH IJ 0
Biounits:
1eqz.pdb1.pdb ABCDEFGH IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P02263_2-91 3.3e-17 1 CL0012 A 1 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P0C1H5_19-102 7.3e-25 1 CL0012 B 18 101 IJ  H-Bb S-Bb L-Bb L-Mn 
Histone Domain P84229_30-132 1.4e-47 1 CL0012 C 29 131 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62801_18-99 5.4e-08 1 CL0012 D 18 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02263_2-91 4e-17 1 CL0012 E 2 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P0C1H5_19-102 9.3e-25 1 CL0012 F 19 101 IJ  H-Bb S-Bb L-Bb 
Histone Domain P84229_17-132 4.2e-49 1 CL0012 G 16 131 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62801_18-99 6.6e-08 1 CL0012 H 17 98 IJ  H-Bb S-Bb L-Bb 
Histone_H2A_C Family P02263_92-126 1.2e-19 1 No_clan A 91 125   
Histone_H2A_C Family P02263_92-126 1.2e-19 1 No_clan E 91 125 I  L-Bb L-Mj 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2B B N/A N/A IJ  H-Bb S-Bb L-Bb L-Mn 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2B F N/A N/A IJ  H-Bb S-Bb L-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H3 C N/A N/A IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H3 G N/A N/A IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H4 D N/A N/A IJ  H-Bb S-Bb L-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H4 H N/A N/A IJ  H-Bb H-Mj S-Bb L-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2A A N/A N/A IJ  H-Bb S-Bb L-Bb 
Class: All alpha proteins
  Fold: Histone-fold
    Superfamily: Histone-fold
      Family: Nucleosome core histones
Histone H2A E N/A N/A IJ  H-Bb S-Bb L-Bb 
GO terms
Protein chains: GO type: GO description:
A/E=1-129 C nuclear chromatin
A/E=1-129 C nucleosome
A/E=1-129 F DNA binding
A/E=1-129 F protein heterodimerization activity
A/E=1-129 P chromatin organization
A/E=1-129 P chromatin silencing
B/F=1-126 C nucleosome
B/F=1-126 C nucleus
B/F=1-126 F DNA binding
B/F=1-126 F protein heterodimerization activity
B/F=1-126 F protein-containing complex binding
B/F=1-126 P nucleosome assembly
C/G=1-136 C nucleosome
C/G=1-136 C nucleus
C/G=1-136 F chromatin binding
C/G=1-136 F DNA binding
C/G=1-136 F protein heterodimerization activity
C/G=1-136 P negative regulation of transcription by RNA polymerase II
D/H=1-103 C host cell nucleus
D/H=1-103 C nucleoplasm
D/H=1-103 C nucleosome
D/H=1-103 F DNA binding
D/H=1-103 F protein heterodimerization activity
D/H=1-103 P DNA-templated transcription, initiation
D/H=1-103 P nucleosome assembly
Sequences
Download file with secondary structure created by Stride  
1eqz.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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