General information
PDB ID 1F5T
Title DIPHTHERIA TOX REPRESSOR (C102D MUTANT) COMPLEXED WITH NICKEL AND DTXR CONSENSUS BINDING SEQUENCE
PDB header TRANSCRIPTION/DNA
Date 2000-06-15
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind dna
Organism CORYNEBACTERIUM DIPHTHERIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1f5t.pdb ABCD EF 0
Biounits:
1f5t.pdb1.pdb ABCD EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Fe_dep_repress Domain P0DJL7_3-62 1.8e-20 1 CL0123 A 1003 1062 EF  H-Bb H-Mj L-Bb L-Mj 
Fe_dep_repr_C Domain P0DJL7_65-120 2.3e-20 1 CL0123 A 1065 1121   
Fe_dep_repress Domain P0DJL7_3-62 1.8e-20 1 CL0123 B 2003 2062 EF  H-Bb H-Mj L-Bb L-Mj 
Fe_dep_repr_C Domain P0DJL7_65-120 2.3e-20 1 CL0123 B 2065 2121   
Fe_dep_repress Domain P0DJL7_3-62 1.8e-20 1 CL0123 C 3003 3062 EF  H-Bb H-Mj L-Bb L-Mj 
Fe_dep_repr_C Domain P0DJL7_65-120 2.3e-20 1 CL0123 C 3065 3121   
Fe_dep_repress Domain P0DJL7_3-62 1.8e-20 1 CL0123 D 4003 4062 EF  H-Bb H-Mj L-Bb L-Mj 
Fe_dep_repr_C Domain P0DJL7_65-120 2.3e-20 1 CL0123 D 4065 4121   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: Iron-dependent repressor protein
Diphtheria toxin repressor (DtxR) A 1002 1064 EF  H-Bb H-Mj L-Bb L-Mj 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: Iron-dependent repressor protein
Diphtheria toxin repressor (DtxR) B 2002 2064 EF  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: Iron-dependent repressor protein
Diphtheria toxin repressor (DtxR) C 3002 3064 EF  H-Bb H-Mj L-Bb L-Mj 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: Iron-dependent repressor protein
Diphtheria toxin repressor (DtxR) D 4002 4064 EF  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: Iron-dependent repressor protein, dimerization domain
    Superfamily: Iron-dependent repressor protein, dimerization domain
      Family: Iron-dependent repressor protein, dimerization domain
Diphtheria toxin repressor (DtxR) A 1065 1121 -
Class: All alpha proteins
  Fold: Iron-dependent repressor protein, dimerization domain
    Superfamily: Iron-dependent repressor protein, dimerization domain
      Family: Iron-dependent repressor protein, dimerization domain
Diphtheria toxin repressor (DtxR) B 2065 2121 -
Class: All alpha proteins
  Fold: Iron-dependent repressor protein, dimerization domain
    Superfamily: Iron-dependent repressor protein, dimerization domain
      Family: Iron-dependent repressor protein, dimerization domain
Diphtheria toxin repressor (DtxR) C 3065 3121 -
Class: All alpha proteins
  Fold: Iron-dependent repressor protein, dimerization domain
    Superfamily: Iron-dependent repressor protein, dimerization domain
      Family: Iron-dependent repressor protein, dimerization domain
Diphtheria toxin repressor (DtxR) D 4065 4121 -
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-121 C cytoplasm
A/B/C/D=1-121 F DNA binding
A/B/C/D=1-121 F DNA-binding transcription factor activity
A/B/C/D=1-121 F identical protein binding
A/B/C/D=1-121 F protein dimerization activity
A/B/C/D=1-121 F SH3 domain binding
A/B/C/D=1-121 F transition metal ion binding
Sequences
Download file with secondary structure created by Stride  
1f5t.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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