General information
PDB ID 1F8V
Title THE STRUCTURE OF PARIACOTO VIRUS REVEALS A DODECAHEDRAL CAGE OF DUPLEX RNA
PDB header VIRUS/RNA
Date 2000-07-05
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind rna
Organism PARIACATO VIRUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1f8v.pdb ADBECF R 0
Biounits:
1f8v.pdb1.pdb ADBECF R 60
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Peptidase_A6 Domain Q9J7Z0_45-361 1.2e-67 1 CL0055 A 45 361   
Peptidase_A6 Domain Q9J7Z0_51-361 9e-68 1 CL0055 B 50 361   
Peptidase_A6 Domain Q9J7Z0_51-361 9.9e-68 1 CL0055 C 51 361 R   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Nodaviridae-like VP
Alphanodavirus capsid protein A N/A N/A -
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Nodaviridae-like VP
Alphanodavirus capsid protein D N/A N/A -
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Nodaviridae-like VP
Alphanodavirus capsid protein A N/A N/A R -
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Nodaviridae-like VP
Alphanodavirus capsid protein D N/A N/A R -
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Nodaviridae-like VP
Alphanodavirus capsid protein B N/A N/A R -
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Nodaviridae-like VP
Alphanodavirus capsid protein E N/A N/A R -
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Nodaviridae-like VP
Alphanodavirus capsid protein B N/A N/A -
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Nodaviridae-like VP
Alphanodavirus capsid protein E N/A N/A -
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Nodaviridae-like VP
Alphanodavirus capsid protein C N/A N/A -
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Nodaviridae-like VP
Alphanodavirus capsid protein F N/A N/A -
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Nodaviridae-like VP
Alphanodavirus capsid protein C N/A N/A R -
Class: All beta proteins
  Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
    Superfamily: Positive stranded ssRNA viruses
      Family: Nodaviridae-like VP
Alphanodavirus capsid protein F N/A N/A R -
GO terms
Protein chains: GO type: GO description:
A/B/C=7-361, D/E/F=362-401 C T=3 icosahedral viral capsid
A/B/C=7-361, D/E/F=362-401 F aspartic-type endopeptidase activity
A/B/C=7-361, D/E/F=362-401 F metal ion binding
A/B/C=7-361, D/E/F=362-401 P permeabilization of host organelle membrane involved in viral entry into host cell
A/B/C=7-361, D/E/F=362-401 P viral entry via permeabilization of inner membrane
Sequences
Download file with secondary structure created by Stride  
1f8v.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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R (rna): 
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