General information
PDB ID 1FKA
Title STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
PDB header RIBOSOME
Date 2000-08-09
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.3
Kind rna
Organism THERMUS THERMOPHILUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1fka.pdb BCDEFGHIJKLMNOPQRST A 0
Biounits:
1fka.pdb1.pdb BCDEFGHIJKLMNOPQRST A 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
S4 Domain P80373_99-146 1.2e-23 1 CL0492 D 99 146 A   
Ribosomal_S5_C Domain Q5SHQ5_82-152 5e-28 1 CL0329 E 82 152 A   
Ribosomal_S5 Domain Q5SHQ5_6-70 9e-24 1 CL0196 E 6 70   
Ribosomal_S6 Domain Q5SLP8_3-92 1.9e-20 1 No_clan F 3 92 A   
Ribosomal_S7 Domain P17291_2-78 4.4e-25 1 No_clan G 3 95 A   
Ribosomal_S7 Domain P17291_72-129 7.7e-20 1 No_clan G 73 146   
Ribosomal_S8 Domain P0DOY9_4-138 7.1e-49 1 No_clan H 4 138 A   
Ribosomal_S15 Domain Q5SJ76_8-88 1.3e-37 1 CL0600 O 8 88 A   
Ribosomal_S19 Domain Q5SHP2_8-80 3.6e-34 1 No_clan S 8 80 A   
Ribosomal_S4 Family P80373_49-98 1.5e-16 1 CL0492 D 49 98   
Ribosomal_S18 Family Q5SLQ0_35-79 9.7e-21 1 CL0123 R 35 79   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit B N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit C N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit D N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit E N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit F N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit G N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit H N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit I N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit J N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit K N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit L N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit M N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit N N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit O N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit P N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit Q N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit R N/A N/A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit S N/A N/A A -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Small subunit
30S subunit T N/A N/A -
GO terms
Protein chains: GO type: GO description:
D=1-209 C small ribosomal subunit
D=1-209 F metal ion binding
D=1-209 F rRNA binding
D=1-209 F structural constituent of ribosome
D=1-209 P translation
E=1-162 C small ribosomal subunit
E=1-162 F rRNA binding
E=1-162 F structural constituent of ribosome
E=1-162 P translation
F=1-101 C ribosome
F=1-101 F rRNA binding
F=1-101 F structural constituent of ribosome
F=1-101 P translation
G=1-151 C small ribosomal subunit
G=1-151 F rRNA binding
G=1-151 F structural constituent of ribosome
G=1-151 F tRNA binding
G=1-151 P translation
H=1-138 C ribosome
H=1-138 F rRNA binding
H=1-138 F structural constituent of ribosome
H=1-138 P translation
O=1-89 C ribosome
O=1-89 F rRNA binding
O=1-89 F structural constituent of ribosome
O=1-89 P translation
R=1-88 C ribosome
R=1-88 F rRNA binding
R=1-88 F structural constituent of ribosome
R=1-88 P translation
S=1-93 C small ribosomal subunit
S=1-93 F rRNA binding
S=1-93 F structural constituent of ribosome
S=1-93 P translation
Sequences
Download file with secondary structure created by Stride  
1fka.pdb1.pdb:   [ download sequences in FASTA format ]
B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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A (rna): 
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