General information
PDB ID 1G2F
Title STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6)
PDB header TRANSCRIPTION/DNA
Date 2000-10-18
Experimental method X-RAY DIFFRACTION
Resolution (A) 2
Kind dna
Organism MUS MUSCULUS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1g2f.pdb CF ABDE 0
Biounits:
1g2f.pdb1.pdb C AB 1
1g2f.pdb2.pdb F DE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-H2C2_2 Domain P08046_380-404 1.5e-09 0 CL0361 C 149 174 A  H-Bb H-Mj L-Bb L-Mj 
zf-H2C2_2 Domain P08046_352-376 2.7e-07 0 CL0361 C 121 146 AB  H-Bb H-Mj S-Bb S-Mj L-Bb 
zf-H2C2_2 Domain P08046_380-404 1.5e-09 0 CL0361 F 249 274 D  H-Bb H-Mj L-Bb L-Mj 
zf-H2C2_2 Domain P08046_352-376 2.6e-07 0 CL0361 F 221 246 D  H-Bb H-Mj S-Bb L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Designed proteins
  Fold: Zinc finger design
    Superfamily: Zinc finger design
      Family: Zinc finger design
TATA box-binding zinc finger, TATAZF C N/A N/A AB  H-Bb H-Mj S-Mj L-Bb L-Mj 
Class: Designed proteins
  Fold: Zinc finger design
    Superfamily: Zinc finger design
      Family: Zinc finger design
TATA box-binding zinc finger, TATAZF F N/A N/A DE  H-Bb H-Mj L-Bb L-Mj 
GO terms
Protein chains: GO type: GO description:
C/F=333-421 C cytoplasm
C/F=333-421 C nuclear chromatin
C/F=333-421 C nucleoplasm
C/F=333-421 C nucleus
C/F=333-421 F DNA binding
C/F=333-421 F DNA-binding transcription activator activity, RNA polymerase II-specific
C/F=333-421 F DNA-binding transcription factor activity
C/F=333-421 F DNA-binding transcription factor activity, RNA polymerase II-specific
C/F=333-421 F double-stranded DNA binding
C/F=333-421 F double-stranded methylated DNA binding
C/F=333-421 F hemi-methylated DNA-binding
C/F=333-421 F histone acetyltransferase binding
C/F=333-421 F promoter-specific chromatin binding
C/F=333-421 F RNA polymerase II core promoter sequence-specific DNA binding
C/F=333-421 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
C/F=333-421 F sequence-specific DNA binding
C/F=333-421 F sequence-specific double-stranded DNA binding
C/F=333-421 F transcription factor binding
C/F=333-421 F transcription regulatory region sequence-specific DNA binding
C/F=333-421 F zinc ion binding
C/F=333-421 P BMP signaling pathway
C/F=333-421 P cellular response to gamma radiation
C/F=333-421 P cellular response to heparin
C/F=333-421 P cellular response to interleukin-8
C/F=333-421 P cellular response to mycophenolic acid
C/F=333-421 P cellular response to organic substance
C/F=333-421 P circadian regulation of gene expression
C/F=333-421 P circadian temperature homeostasis
C/F=333-421 P estrous cycle
C/F=333-421 P glomerular mesangial cell proliferation
C/F=333-421 P interleukin-1-mediated signaling pathway
C/F=333-421 P learning or memory
C/F=333-421 P locomotor rhythm
C/F=333-421 P long-term memory
C/F=333-421 P negative regulation of canonical Wnt signaling pathway
C/F=333-421 P negative regulation of transcription by RNA polymerase II
C/F=333-421 P positive regulation of cell death
C/F=333-421 P positive regulation of chemokine biosynthetic process
C/F=333-421 P positive regulation of gene expression
C/F=333-421 P positive regulation of glomerular metanephric mesangial cell proliferation
C/F=333-421 P positive regulation of hormone biosynthetic process
C/F=333-421 P positive regulation of interleukin-1 beta production
C/F=333-421 P positive regulation of neuron apoptotic process
C/F=333-421 P positive regulation of neuron death
C/F=333-421 P positive regulation of pri-miRNA transcription by RNA polymerase II
C/F=333-421 P positive regulation of smooth muscle cell migration
C/F=333-421 P positive regulation of smooth muscle cell proliferation
C/F=333-421 P positive regulation of tau-protein kinase activity
C/F=333-421 P positive regulation of transcription by RNA polymerase II
C/F=333-421 P positive regulation of transcription, DNA-templated
C/F=333-421 P regulation of apoptotic process
C/F=333-421 P regulation of long-term neuronal synaptic plasticity
C/F=333-421 P regulation of progesterone biosynthetic process
C/F=333-421 P regulation of protein sumoylation
C/F=333-421 P regulation of transcription from RNA polymerase II promoter in response to hypoxia
C/F=333-421 P regulation of transcription, DNA-templated
C/F=333-421 P response to glucose
C/F=333-421 P response to hypoxia
C/F=333-421 P response to insulin
C/F=333-421 P response to ischemia
C/F=333-421 P skeletal muscle cell differentiation
C/F=333-421 P T cell differentiation
Sequences
Download file with secondary structure created by Stride  
1g2f.pdb1.pdb:   [ download sequences in FASTA format ]
A (dna): 
Click "SHOW" for view sequence
B (dna): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
1g2f.pdb2.pdb:   [ download sequences in FASTA format ]
D (dna): 
Click "SHOW" for view sequence
E (dna): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text