General information
PDB ID 1JE8
Title TWO-COMPONENT RESPONSE REGULATOR NARL/DNA COMPLEX: DNA BENDING FOUND IN A HIGH AFFINITY SITE
PDB header TRANSCRIPTION/DNA
Date 2001-06-15
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.12
Kind dna
Organism ESCHERICHIA COLI
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CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1je8.pdb ABEF CDGH 0
Biounits:
1je8.pdb1.pdb AB CD 1
1je8.pdb2.pdb EF GH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
GerE Domain P0AF28_154-210 3.9e-17 1 CL0123 A 154 210 CD  H-Bb H-Mj L-Bb 
GerE Domain P0AF28_154-210 3.9e-17 1 CL0123 B 154 210 CD  H-Bb H-Mj L-Bb 
GerE Domain P0AF28_154-210 4.1e-17 1 CL0123 E 154 210 GH  H-Bb H-Mj L-Bb 
GerE Domain P0AF28_154-210 3.9e-17 1 CL0123 F 154 210 GH  H-Bb H-Mj L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: C-terminal effector domain of the bipartite response regulators
      Family: GerE-like (LuxR/UhpA family of transcriptional regulators)
Nitrate/nitrite response regulator (NarL) A N/A N/A CD  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: C-terminal effector domain of the bipartite response regulators
      Family: GerE-like (LuxR/UhpA family of transcriptional regulators)
Nitrate/nitrite response regulator (NarL) B N/A N/A CD  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: C-terminal effector domain of the bipartite response regulators
      Family: GerE-like (LuxR/UhpA family of transcriptional regulators)
Nitrate/nitrite response regulator (NarL) E N/A N/A GH  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: C-terminal effector domain of the bipartite response regulators
      Family: GerE-like (LuxR/UhpA family of transcriptional regulators)
Nitrate/nitrite response regulator (NarL) F N/A N/A GH  H-Bb H-Mj L-Bb 
GO terms
Protein chains: GO type: GO description:
A/B/E/F=147-216 C cytosol
A/B/E/F=147-216 C protein-DNA complex
A/B/E/F=147-216 F ATP binding
A/B/E/F=147-216 F DNA binding
A/B/E/F=147-216 F DNA-binding transcription repressor activity
A/B/E/F=147-216 F transcription regulatory region sequence-specific DNA binding
A/B/E/F=147-216 P nitrate assimilation
A/B/E/F=147-216 P phosphorelay signal transduction system
A/B/E/F=147-216 P regulation of gene expression
A/B/E/F=147-216 P regulation of nitrate assimilation
A/B/E/F=147-216 P regulation of transcription, DNA-templated
Sequences
Download file with secondary structure created by Stride  
1je8.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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1je8.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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E (protein): 
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F (protein): 
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