General information
PDB ID 1MNM
Title YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE
PDB header TRANSCRIPTION/DNA
Date 1997-11-03
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.25
Kind dna
Organism SYNTHETIC CONSTRUCT, SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1mnm.pdb ABCD EF 0
Biounits:
1mnm.pdb1.pdb ABCD EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
SRF-TF Domain P11746_25-72 4.6e-22 1 No_clan A 25 72 EF  H-Bb H-Mj 
SRF-TF Domain P11746_25-72 4e-22 1 No_clan B 25 72 EF  H-Bb H-Mj L-Bb 
Homeodomain Domain P0CY08_132-189 3.6e-10 1 CL0123 C 131 189 EF  H-Bb H-Mj L-Bb L-Mn 
Homeodomain Domain P0CY08_132-189 3.6e-10 1 CL0123 D 131 189 EF  H-Bb H-Mj L-Bb L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
mat alpha2 Homeodomain C N/A N/A EF  H-Bb H-Mj L-Bb L-Mn 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Homeodomain
mat alpha2 Homeodomain D N/A N/A EF  H-Bb H-Mj L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: SRF-like
    Superfamily: SRF-like
      Family: SRF-like
MCM1 transcriptional regulator A N/A N/A EF  H-Bb H-Mj L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: SRF-like
    Superfamily: SRF-like
      Family: SRF-like
MCM1 transcriptional regulator B N/A N/A EF  H-Bb H-Mj L-Bb 
GO terms
Protein chains: GO type: GO description:
A/B=1-100 C cytosol
A/B=1-100 C nuclear chromatin
A/B=1-100 C nucleus
A/B=1-100 F DNA replication origin binding
A/B=1-100 F DNA-binding transcription activator activity, RNA polymerase II-specific
A/B=1-100 F DNA-binding transcription factor activity, RNA polymerase II-specific
A/B=1-100 F DNA-binding transcription repressor activity, RNA polymerase II-specific
A/B=1-100 F protein dimerization activity
A/B=1-100 F RNA polymerase II activating transcription factor binding
A/B=1-100 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/B=1-100 F RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending
A/B=1-100 F RNA polymerase II repressing transcription factor binding
A/B=1-100 F sequence-specific DNA binding
A/B=1-100 P arginine metabolic process
A/B=1-100 P cell cycle
A/B=1-100 P negative regulation of mating-type specific transcription from RNA polymerase II promoter
A/B=1-100 P negative regulation of transcription by RNA polymerase II
A/B=1-100 P positive regulation of mating-type specific transcription from RNA polymerase II promoter
A/B=1-100 P positive regulation of transcription by RNA polymerase II
A/B=1-100 P regulation of mating type switching
C/D=103-189 C nucleus
C/D=103-189 F DNA binding, bending
C/D=103-189 F DNA-binding transcription repressor activity, RNA polymerase II-specific
C/D=103-189 F sequence-specific DNA binding
C/D=103-189 P negative regulation of mating-type specific transcription from RNA polymerase II promoter
Sequences
Download file with secondary structure created by Stride  
1mnm.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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