General information
PDB ID 1MSF
Title SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA- BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES
PDB header DNA BINDING PROTEIN/DNA
Date 1995-01-24
Experimental method SOLUTION NMR
Resolution (A) N/A
Kind dna
Organism MUS MUSCULUS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1msf.pdb C AB 25
NMR models:
1msf.MDL1.pdb C AB 1
1msf.MDL2.pdb C AB 1
1msf.MDL3.pdb C AB 1
1msf.MDL4.pdb C AB 1
1msf.MDL5.pdb C AB 1
1msf.MDL6.pdb C AB 1
1msf.MDL7.pdb C AB 1
1msf.MDL8.pdb C AB 1
1msf.MDL9.pdb C AB 1
1msf.MDL10.pdb C AB 1
1msf.MDL11.pdb C AB 1
1msf.MDL12.pdb C AB 1
1msf.MDL13.pdb C AB 1
1msf.MDL14.pdb C AB 1
1msf.MDL15.pdb C AB 1
1msf.MDL16.pdb C AB 1
1msf.MDL17.pdb C AB 1
1msf.MDL18.pdb C AB 1
1msf.MDL19.pdb C AB 1
1msf.MDL20.pdb C AB 1
1msf.MDL21.pdb C AB 1
1msf.MDL22.pdb C AB 1
1msf.MDL23.pdb C AB 1
1msf.MDL24.pdb C AB 1
1msf.MDL25.pdb C AB 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Myb_DNA-bind_6 Domain P06876_97-154 1.4e-19 1 CL0123 C 95 153 AB  H-Bb H-Mj L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Myb/SANT domain
c-Myb, DNA-binding domain C 89 143 AB  H-Bb L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: Myb/SANT domain
c-Myb, DNA-binding domain C 144 193 AB  H-Bb H-Mj L-Bb L-Mj 
GO terms
Protein chains: GO type: GO description:
C=90-193 C cytosol
C=90-193 C nucleoplasm
C=90-193 C nucleus
C=90-193 F DNA binding
C=90-193 F DNA-binding transcription activator activity, RNA polymerase II-specific
C=90-193 F DNA-binding transcription factor activity
C=90-193 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
C=90-193 F sequence-specific DNA binding
C=90-193 F transcription coregulator activity
C=90-193 F transcription regulatory region sequence-specific DNA binding
C=90-193 F WD40-repeat domain binding
C=90-193 P B cell differentiation
C=90-193 P calcium ion transport
C=90-193 P cellular response to interleukin-6
C=90-193 P cellular response to leukemia inhibitory factor
C=90-193 P chromatin remodeling
C=90-193 P embryonic digestive tract development
C=90-193 P G1/S transition of mitotic cell cycle
C=90-193 P homeostasis of number of cells
C=90-193 P in utero embryonic development
C=90-193 P mitotic cell cycle
C=90-193 P myeloid cell differentiation
C=90-193 P negative regulation of transcription by RNA polymerase II
C=90-193 P negative regulation of transcription, DNA-templated
C=90-193 P positive regulation of histone H3-K4 methylation
C=90-193 P positive regulation of histone H3-K9 methylation
C=90-193 P positive regulation of T-helper cell differentiation
C=90-193 P positive regulation of transcription by RNA polymerase II
C=90-193 P positive regulation of transcription, DNA-templated
C=90-193 P regulation of gene expression
C=90-193 P regulation of transcription, DNA-templated
C=90-193 P spleen development
C=90-193 P stem cell division
C=90-193 P thymus development
Sequences
Download file with secondary structure created by Stride  
1msf.MDL1.pdb:   [ download sequences in FASTA format ]
A (dna): 
Click "SHOW" for view sequence
B (dna): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text