General information
PDB ID 1RUN
Title CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
PDB header TRANSCRIPTION/DNA
Date 1996-05-26
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.7
Kind dna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1run.pdb AB CDEF 0
Biounits:
1run.pdb1.pdb AB CDEF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
cNMP_binding Domain P0ACJ8_21-110 3.4e-24 1 CL0029 A 20 109 F   
HTH_Crp_2 Domain P0ACJ8_142-206 2.6e-13 1 CL0123 A 141 206 CF   
cNMP_binding Domain P0ACJ8_21-110 3.2e-24 1 CL0029 B 20 109   
HTH_Crp_2 Domain P0ACJ8_142-206 3.1e-13 1 CL0123 B 141 205 DE   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: CAP C-terminal domain-like
Catabolite gene activator protein (CAP), C-terminal domain A 138 209 CF  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: CAP C-terminal domain-like
Catabolite gene activator protein (CAP), C-terminal domain B 138 205 DE  H-Bb H-Mj L-Bb 
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: cAMP-binding domain-like
      Family: cAMP-binding domain
Catabolite gene activator protein, N-terminal domain A 9 137 F -
Class: All beta proteins
  Fold: Double-stranded beta-helix
    Superfamily: cAMP-binding domain-like
      Family: cAMP-binding domain
Catabolite gene activator protein, N-terminal domain B 9 137 -
GO terms
Protein chains: GO type: GO description:
A/B=2-210 C cytosol
A/B=2-210 C protein-DNA complex
A/B=2-210 F AT DNA binding
A/B=2-210 F cAMP binding
A/B=2-210 F DNA binding, bending
A/B=2-210 F DNA-binding transcription factor activity
A/B=2-210 F identical protein binding
A/B=2-210 F sequence-specific DNA binding
A/B=2-210 P carbon catabolite repression of transcription
A/B=2-210 P negative regulation of transcription, DNA-templated
A/B=2-210 P positive regulation of transcription, DNA-templated
A/B=2-210 P transcription, DNA-templated
Sequences
Download file with secondary structure created by Stride  
1run.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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E (dna): 
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F (dna): 
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A (protein): 
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B (protein): 
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