General information
PDB ID 1SKN
Title THE BINDING DOMAIN OF SKN-1 IN COMPLEX WITH DNA: A NEW DNA-BINDING MOTIF
PDB header TRANSCRIPTION/DNA
Date 1998-03-30
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.5
Kind dna
Organism CAENORHABDITIS ELEGANS
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CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1skn.pdb P AB 0
Biounits:
1skn.pdb1.pdb P AB 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
bZIP_Maf Coiled-coil P34707_562-619 4.7e-11 1 CL0018 P 472 529 AB  H-Bb H-Mj 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: A DNA-binding domain in eukaryotic transcription factors
    Superfamily: A DNA-binding domain in eukaryotic transcription factors
      Family: A DNA-binding domain in eukaryotic transcription factors
Skn-1 P N/A N/A AB  H-Bb H-Mj 
GO terms
Protein chains: GO type: GO description:
P=540-623 C cytoplasm
P=540-623 C endoplasmic reticulum
P=540-623 C host cell nucleus
P=540-623 C mitochondrion
P=540-623 C nucleus
P=540-623 F DNA-binding transcription factor activity
P=540-623 F Hsp70 protein binding
P=540-623 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
P=540-623 F sequence-specific DNA binding
P=540-623 F transcription regulatory region sequence-specific DNA binding
P=540-623 P cell fate specification
P=540-623 P determination of adult lifespan
P=540-623 P embryonic digestive tract development
P=540-623 P embryonic pattern specification
P=540-623 P endodermal cell fate specification
P=540-623 P mesendoderm development
P=540-623 P multicellular organism development
P=540-623 P negative regulation of neuron death
P=540-623 P positive regulation of cellular response to manganese ion
P=540-623 P positive regulation of cellular response to oxidative stress
P=540-623 P positive regulation of gene expression
P=540-623 P positive regulation of transcription by RNA polymerase II
P=540-623 P positive regulation of transcription from RNA polymerase II promoter in response to heat stress
P=540-623 P positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response
P=540-623 P positive regulation of transcription, DNA-templated
P=540-623 P regulation of transcription by RNA polymerase II
P=540-623 P regulation of translation
P=540-623 P response to heat
P=540-623 P response to oxidative stress
P=540-623 P response to paraquat
P=540-623 P response to superoxide
Sequences
Download file with secondary structure created by Stride  
1skn.pdb1.pdb:   [ download sequences in FASTA format ]
A (dna): 
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B (dna): 
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P (protein): 
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