General information
PDB ID 1UBD
Title CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENT
PDB header TRANSCRIPTION/DNA
Date 1996-10-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.5
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1ubd.pdb C AB 0
Biounits:
1ubd.pdb1.pdb C AB 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-H2C2_2 Domain P25490_366-392 8.2e-08 0 CL0361 C 369 396 AB  H-Bb H-Mj 
zf-H2C2_2 Domain P25490_337-361 1e-06 0 CL0361 C 339 365 B  H-Bb H-Mj 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Small proteins
  Fold: beta-beta-alpha zinc fingers
    Superfamily: beta-beta-alpha zinc fingers
      Family: Classic zinc finger, C2H2
Ying-yang 1 (yy1, zinc finger domain) C 295 322 B  H-Bb 
Class: Small proteins
  Fold: beta-beta-alpha zinc fingers
    Superfamily: beta-beta-alpha zinc fingers
      Family: Classic zinc finger, C2H2
Ying-yang 1 (yy1, zinc finger domain) C 323 350 AB  H-Bb H-Mj L-Mj 
Class: Small proteins
  Fold: beta-beta-alpha zinc fingers
    Superfamily: beta-beta-alpha zinc fingers
      Family: Classic zinc finger, C2H2
Ying-yang 1 (yy1, zinc finger domain) C 351 380 AB  H-Bb H-Mj L-Mj 
Class: Small proteins
  Fold: beta-beta-alpha zinc fingers
    Superfamily: beta-beta-alpha zinc fingers
      Family: Classic zinc finger, C2H2
Ying-yang 1 (yy1, zinc finger domain) C 381 408 BA  H-Bb H-Mj L-Mj 
GO terms
Protein chains: GO type: GO description:
C=291-414 C cytoplasm
C=291-414 C Ino80 complex
C=291-414 C nuclear chromatin
C=291-414 C nuclear matrix
C=291-414 C nucleoplasm
C=291-414 C nucleus
C=291-414 C PcG protein complex
C=291-414 C transcription regulator complex
C=291-414 F cis-regulatory region sequence-specific DNA binding
C=291-414 F DNA binding
C=291-414 F DNA-binding transcription repressor activity
C=291-414 F DNA-binding transcription repressor activity, RNA polymerase II-specific
C=291-414 F four-way junction DNA binding
C=291-414 F metal ion binding
C=291-414 F RNA binding
C=291-414 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
C=291-414 F sequence-specific DNA binding
C=291-414 F sequence-specific double-stranded DNA binding
C=291-414 F SMAD binding
C=291-414 F transcription regulatory region sequence-specific DNA binding
C=291-414 P anterior/posterior pattern specification
C=291-414 P camera-type eye morphogenesis
C=291-414 P cell differentiation
C=291-414 P cellular response to DNA damage stimulus
C=291-414 P cellular response to interleukin-1
C=291-414 P cellular response to UV
C=291-414 P chromosome organization
C=291-414 P double-strand break repair via homologous recombination
C=291-414 P negative regulation of cell growth involved in cardiac muscle cell development
C=291-414 P negative regulation of gene expression
C=291-414 P negative regulation of interferon-beta production
C=291-414 P negative regulation of pri-miRNA transcription by RNA polymerase II
C=291-414 P negative regulation of transcription by RNA polymerase II
C=291-414 P positive regulation of transcription by RNA polymerase II
C=291-414 P protein deubiquitination
C=291-414 P regulation of transcription by RNA polymerase II
C=291-414 P response to prostaglandin F
C=291-414 P response to UV-C
C=291-414 P RNA localization
C=291-414 P spermatogenesis
Sequences
Download file with secondary structure created by Stride  
1ubd.pdb1.pdb:   [ download sequences in FASTA format ]
A (dna): 
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B (dna): 
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C (protein): 
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