General information
PDB ID 1VFC
Title SOLUTION STRUCTURE OF THE DNA COMPLEX OF HUMAN TRF2
PDB header STRUCTURAL PROTEIN/DNA
Date 2004-04-12
Experimental method SOLUTION NMR
Resolution (A) N/A
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1vfc.pdb A BC 20
NMR models:
1vfc.MDL1.pdb A BC 1
1vfc.MDL2.pdb A BC 1
1vfc.MDL3.pdb A BC 1
1vfc.MDL4.pdb A BC 1
1vfc.MDL5.pdb A BC 1
1vfc.MDL6.pdb A BC 1
1vfc.MDL7.pdb A BC 1
1vfc.MDL8.pdb A BC 1
1vfc.MDL9.pdb A BC 1
1vfc.MDL10.pdb A BC 1
1vfc.MDL11.pdb A BC 1
1vfc.MDL12.pdb A BC 1
1vfc.MDL13.pdb A BC 1
1vfc.MDL14.pdb A BC 1
1vfc.MDL15.pdb A BC 1
1vfc.MDL16.pdb A BC 1
1vfc.MDL17.pdb A BC 1
1vfc.MDL18.pdb A BC 1
1vfc.MDL19.pdb A BC 1
1vfc.MDL20.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Myb_DNA-binding Domain Q15554_489-537 6e-14 1 CL0123 A 447 495 BC  H-Bb H-Mj L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: Homeodomain-like
      Family: DNA-binding domain of telomeric protein
Telomeric repeat binding factor 2, TRF2 A 438 500 BC -
GO terms
Protein chains: GO type: GO description:
A=480-542 C axon cytoplasm
A=480-542 C chromosome, telomeric region
A=480-542 C nuclear body
A=480-542 C nuclear chromosome, telomeric region
A=480-542 C nuclear telomere cap complex
A=480-542 C nucleoplasm
A=480-542 C nucleus
A=480-542 C shelterin complex
A=480-542 F double-stranded telomeric DNA binding
A=480-542 F enzyme binding
A=480-542 F G-rich strand telomeric DNA binding
A=480-542 F protein C-terminus binding
A=480-542 F protein homodimerization activity
A=480-542 F protein-containing complex binding
A=480-542 F telomeric DNA binding
A=480-542 P cell cycle
A=480-542 P cellular senescence
A=480-542 P negative regulation of beta-galactosidase activity
A=480-542 P negative regulation of cellular senescence
A=480-542 P negative regulation of exonuclease activity
A=480-542 P negative regulation of gene expression
A=480-542 P negative regulation of t-circle formation
A=480-542 P negative regulation of telomere capping
A=480-542 P negative regulation of telomere maintenance
A=480-542 P negative regulation of telomere maintenance via recombination
A=480-542 P negative regulation of telomere maintenance via semi-conservative replication
A=480-542 P negative regulation of telomere maintenance via telomerase
A=480-542 P negative regulation of telomere maintenance via telomere lengthening
A=480-542 P negative regulation of telomere single strand break repair
A=480-542 P negative regulation of telomeric D-loop disassembly
A=480-542 P positive regulation of gene expression
A=480-542 P positive regulation of nitric-oxide synthase activity
A=480-542 P protection from non-homologous end joining at telomere
A=480-542 P protein localization to chromosome, telomeric region
A=480-542 P regulation of telomere maintenance
A=480-542 P regulation of telomere maintenance via telomerase
A=480-542 P RNA-dependent DNA biosynthetic process
A=480-542 P telomere capping
A=480-542 P telomere maintenance
A=480-542 P telomeric D-loop disassembly
A=480-542 P telomeric loop formation
Sequences
Download file with secondary structure created by Stride  
1vfc.MDL1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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