General information
PDB ID 1VOL
Title TFIIB (HUMAN CORE DOMAIN)/TBP (A.THALIANA)/TATA ELEMENT TERNARY COMPLEX
PDB header TRANSCRIPTION/DNA
Date 1996-04-29
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.7
Kind dna
Organism HOMO SAPIENS, ARABIDOPSIS THALIANA
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1vol.pdb AB CD 0
Biounits:
1vol.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TFIIB Domain Q00403_204-295 1.5e-27 1 CL0065 A 204 295 D  H-Bb L-Bb 
TFIIB Domain Q00403_110-201 1.8e-26 1 CL0065 A 113 201 C  H-Bb 
TBP Domain P28147_112-195 3.7e-33 1 CL0407 B 112 195 CD  S-Bb S-Mn L-Bb L-Mj L-Mn 
TBP Domain P28147_22-104 9.8e-32 1 CL0407 B 22 104 CD  S-Bb S-Mn L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: Cyclin-like
    Superfamily: Cyclin-like
      Family: Transcription factor IIB (TFIIB), core domain
Transcription factor IIB (TFIIB), core domain A 113 207 C  H-Bb 
Class: All alpha proteins
  Fold: Cyclin-like
    Superfamily: Cyclin-like
      Family: Transcription factor IIB (TFIIB), core domain
Transcription factor IIB (TFIIB), core domain A 208 316 D  H-Bb L-Bb 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain B 12 115 CD  S-Bb S-Mn L-Bb 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain B 116 198 CD  S-Bb S-Mn L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
A=113-316 C chromosome
A=113-316 C nuclear body
A=113-316 C nucleoplasm
A=113-316 C nucleus
A=113-316 C protein-DNA complex
A=113-316 C RNA polymerase II transcription regulator complex
A=113-316 C transcription factor TFIID complex
A=113-316 C transcription preinitiation complex
A=113-316 F acetyltransferase activity
A=113-316 F core promoter sequence-specific DNA binding
A=113-316 F histone acetyltransferase activity
A=113-316 F promoter-specific chromatin binding
A=113-316 F RNA polymerase II complex binding
A=113-316 F RNA polymerase II complex recruiting activity
A=113-316 F RNA polymerase II core promoter sequence-specific DNA binding
A=113-316 F RNA polymerase II general transcription initiation factor activity
A=113-316 F TBP-class protein binding
A=113-316 F thyroid hormone receptor binding
A=113-316 F transcription factor binding
A=113-316 F zinc ion binding
A=113-316 P DNA-templated transcription, initiation
A=113-316 P positive regulation by host of viral transcription
A=113-316 P positive regulation of core promoter binding
A=113-316 P positive regulation of transcription initiation from RNA polymerase II promoter
A=113-316 P positive regulation of viral transcription
A=113-316 P protein acetylation
A=113-316 P RNA polymerase II core complex assembly
A=113-316 P RNA polymerase II preinitiation complex assembly
A=113-316 P snRNA transcription by RNA polymerase II
A=113-316 P transcription by RNA polymerase II
A=113-316 P transcription initiation from RNA polymerase II promoter
A=113-316 P transcriptional start site selection at RNA polymerase II promoter
A=113-316 P viral process
B=1-200 C nucleus
B=1-200 C transcription factor TFIID complex
B=1-200 C transcription regulator complex
B=1-200 F DNA-binding transcription factor activity
B=1-200 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
B=1-200 F RNA polymerase II core promoter sequence-specific DNA binding
B=1-200 F transcription factor binding
B=1-200 P DNA-templated transcription, initiation
B=1-200 P transcription by RNA polymerase II
Sequences
Download file with secondary structure created by Stride  
1vol.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text