General information
PDB ID 1W2B
Title TRIGGER FACTOR RIBOSOME BINDING DOMAIN IN COMPLEX WITH 50S
PDB header RIBOSOME
Date 2004-07-01
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.5
Kind rna
Organism HALOARCULA MARISMORTUI, ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1w2b.pdb 125ABCDEFGHIJKLMNOPQRSTUVWXYZ 09 0
Biounits:
1w2b.pdb1.pdb 125ABCDEFGHIJKLMNOPQRSTUVWXYZ 09 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L2_C Domain P20276_90-225 8.5e-46 1 CL0107 A 89 224 0   
Ribosomal_L2 Domain P20276_11-83 3.7e-17 1 CL0021 A 10 82 0   
Ribosomal_L5 Domain P14124_12-65 1.8e-15 1 CL0652 D 11 64 09   
Ribosomal_L5_C Domain P14124_69-166 3.2e-08 1 No_clan D 68 149 09   
Ribosomal_L6 Domain P14135_8-80 4.6e-15 1 No_clan E 7 79 0   
Ribosomal_L6 Domain P14135_92-166 4.6e-14 1 No_clan E 91 165 0   
Ribosomal_L7Ae Domain P12743_15-108 4.3e-25 1 CL0101 F 14 108 0   
Ribosomal_L16 Domain P60617_12-166 1.4e-21 1 No_clan H 9 159 09   
Ribosomal_L14 Domain P22450_12-132 1.7e-36 1 No_clan J 12 132 0   
Ribosomal_L22 Domain P10970_17-149 4.1e-21 1 No_clan Q 16 148 0   
Ribosomal_L24e Domain P14116_5-57 1.2e-21 1 CL0175 T 4 56 0   
Ribosomal_L30 Domain P14121_2-52 8.2e-10 1 No_clan V 2 52 09   
Ribosomal_L39 Family P22452_8-49 2.1e-14 1 No_clan 1 7 48 0   
Ribosomal_L44 Family P32411_16-91 1.5e-27 1 CL0167 2 16 91 0   
Trigger_N Family P0A850_25-59 1.2e-10 1 No_clan 5 25 59 0   
Ribosomal_L3 Family P20279_2-338 1.4e-109 1 CL0575 B 1 337 0   
Ribosomal_L4 Family P12735_16-246 1.7e-38 1 No_clan C 16 246 0   
Ribosomal_L13 Family P29198_7-110 2.7e-19 1 No_clan I 7 110 0   
Ribosomal_L27A Family P12737_25-142 8.7e-15 1 CL0588 K 24 141 0   
Ribosomal_L15e Family P60618_4-191 1.4e-82 1 CL0652 L 3 190 0   
Ribosomal_L5e Family P14123_5-99 5.3e-18 1 CL0267 M 4 98 09   
Ribosomal_L5e Family P14123_92-133 5.3e-08 1 CL0267 M 91 132 09   
Ribosomal_L18 Family P12733_3-117 2.2e-05 0 CL0588 N 1 115 0   
Ribosomal_L19e Family P14119_3-144 2.1e-56 1 No_clan O 2 143 0   
Ribosomal_L21e Family P12734_2-96 4.3e-29 1 CL0107 P 1 95 09   
Ribosomal_L23 Family P12732_4-77 8.8e-16 1 No_clan R 3 76 0   
Ribosomal_L26 Family P10972_2-116 2.1e-23 1 CL0107 S 1 115 0   
KOW Family P10972_45-76 4.6e-08 1 CL0107 S 44 75 0   
Ribosomal_L29 Family P10971_7-63 5.5e-20 1 CL0346 U 6 62 0   
Ribosomal_L31e Family P18138_8-85 1.6e-09 1 No_clan W 8 84 0   
Ribosomal_L32e Family P12736_126-231 1.5e-35 1 No_clan X 125 230 0   
Ribosomal_L37ae Family P60619_11-82 2.2e-27 1 CL0167 Y 10 82 0   
Ribosomal_L37e Family P32410_3-56 1.2e-22 1 CL0167 Z 2 55 0   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit 1 N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit 2 N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit 5 N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit A N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit B N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit C N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit D N/A N/A 09 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit E N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit F N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit G N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit H N/A N/A 09 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit I N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit J N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit K N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit L N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit M N/A N/A 09 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit N N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit O N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit P N/A N/A 09 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit R N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit S N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit T N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit U N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit V N/A N/A 09 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit W N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit X N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit Y N/A N/A 0 -
Class: Low resolution protein structures
  Fold: Ribosome and ribosomal fragments
    Superfamily: Ribosome and ribosomal fragments
      Family: Large subunit
50S subunit Z N/A N/A 0 -
GO terms
Protein chains: GO type: GO description:
1=2-49 C ribosome
1=2-49 F rRNA binding
1=2-49 F structural constituent of ribosome
1=2-49 P translation
2=1-92 C ribosome
2=1-92 F large ribosomal subunit rRNA binding
2=1-92 F structural constituent of ribosome
2=1-92 F tRNA binding
2=1-92 F zinc ion binding
2=1-92 P translation
5=1-144 C cytosol
5=1-144 C membrane
5=1-144 F identical protein binding
5=1-144 F peptidyl-prolyl cis-trans isomerase activity
5=1-144 F protein folding chaperone
5=1-144 F ribosome binding
5=1-144 P 'de novo' cotranslational protein folding
5=1-144 P cell cycle
5=1-144 P cell division
5=1-144 P chaperone-mediated protein folding
5=1-144 P protein transport
5=1-144 P protein unfolding
5=1-144 P response to heat
A=2-240 C large ribosomal subunit
A=2-240 F rRNA binding
A=2-240 F structural constituent of ribosome
A=2-240 P translation
B=2-338 C ribosome
B=2-338 F rRNA binding
B=2-338 F structural constituent of ribosome
B=2-338 P translation
C=1-246 C ribosome
C=1-246 F rRNA binding
C=1-246 F structural constituent of ribosome
C=1-246 P translation
D=2-177 C ribosome
D=2-177 F rRNA binding
D=2-177 F structural constituent of ribosome
D=2-177 F tRNA binding
D=2-177 P translation
E=2-178 C ribosome
E=2-178 F rRNA binding
E=2-178 F structural constituent of ribosome
E=2-178 P translation
F=2-120 C cytoplasm
F=2-120 C ribonucleoprotein complex
F=2-120 C ribosome
F=2-120 F ribonuclease P activity
F=2-120 F rRNA binding
F=2-120 F structural constituent of ribosome
F=2-120 P ribosome biogenesis
F=2-120 P translation
F=2-120 P tRNA 5'-leader removal
G=1-348 C ribosome
G=1-348 F large ribosomal subunit rRNA binding
G=1-348 P ribosome biogenesis
G=1-348 P translation
H=14-130 C ribosome
H=14-130 F rRNA binding
H=14-130 F structural constituent of ribosome
H=14-130 F tRNA binding
H=14-130 P translation
I=1-145 C large ribosomal subunit
I=1-145 F rRNA binding
I=1-145 F structural constituent of ribosome
I=1-145 P translation
J=1-132 C ribosome
J=1-132 F rRNA binding
J=1-132 F structural constituent of ribosome
J=1-132 P translation
K=2-165 C large ribosomal subunit
K=2-165 F rRNA binding
K=2-165 F structural constituent of ribosome
K=2-165 P translation
L=2-194 C ribosome
L=2-194 F rRNA binding
L=2-194 F structural constituent of ribosome
L=2-194 P translation
M=2-187 C ribosome
M=2-187 F 5S rRNA binding
M=2-187 F structural constituent of ribosome
M=2-187 P translation
N=2-116 C ribosome
N=2-116 F rRNA binding
N=2-116 F structural constituent of ribosome
N=2-116 P translation
O=2-149 C cytosolic large ribosomal subunit
O=2-149 F large ribosomal subunit rRNA binding
O=2-149 F structural constituent of ribosome
O=2-149 P translation
P=2-96 C ribosome
P=2-96 F rRNA binding
P=2-96 F structural constituent of ribosome
P=2-96 P translation
Q=2-155 C large ribosomal subunit
Q=2-155 F rRNA binding
Q=2-155 F structural constituent of ribosome
Q=2-155 P translation
R=2-85 C ribosome
R=2-85 F rRNA binding
R=2-85 F structural constituent of ribosome
R=2-85 P translation
S=2-120 C large ribosomal subunit
S=2-120 F rRNA binding
S=2-120 F structural constituent of ribosome
S=2-120 P translation
T=2-67 C ribosome
T=2-67 F rRNA binding
T=2-67 F structural constituent of ribosome
T=2-67 F zinc ion binding
T=2-67 P translation
U=2-71 C ribosome
U=2-71 F rRNA binding
U=2-71 F structural constituent of ribosome
U=2-71 P translation
V=1-154 C large ribosomal subunit
V=1-154 F rRNA binding
V=1-154 F structural constituent of ribosome
V=1-154 P translation
W=2-92 C ribosome
W=2-92 F rRNA binding
W=2-92 F structural constituent of ribosome
W=2-92 P translation
X=2-241 C ribosome
X=2-241 F DNA binding
X=2-241 F nucleotide binding
X=2-241 F rRNA binding
X=2-241 F structural constituent of ribosome
X=2-241 P DNA repair
X=2-241 P translation
Y=49-79 C ribosome
Y=49-79 F large ribosomal subunit rRNA binding
Y=49-79 F structural constituent of ribosome
Y=49-79 F zinc ion binding
Y=49-79 P translation
Z=2-57 C ribosome
Z=2-57 F rRNA binding
Z=2-57 F structural constituent of ribosome
Z=2-57 F zinc ion binding
Z=2-57 P translation
Sequences
Download file with secondary structure created by Stride  
1w2b.pdb1.pdb:   [ download sequences in FASTA format ]
1 (protein): 
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2 (protein): 
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5 (protein): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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0 (rna): 
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9 (rna): 
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