General information
PDB ID 1YO5
Title ANALYSIS OF THE 2.0A CRYSTAL STRUCTURE OF THE PROTEIN-DNA COMPLEX OF HUMAN PDEF ETS DOMAIN BOUND TO THE PROSTATE SPECIFIC ANTIGEN REGULATORY SITE
PDB header TRANSCRIPTION/DNA
Date 2005-01-26
Experimental method X-RAY DIFFRACTION
Resolution (A) 2
Kind dna
Organism HOMO SAPIENS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1yo5.pdb C AB 0
Biounits:
1yo5.pdb1.pdb C AB 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ets Domain O95238_250-332 2.1e-35 1 CL0123 C 250 332 AB  H-Bb H-Mj S-Bb L-Bb L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: ets domain
Sam pointed domain containing ets transcription SPDEF C 247 334 AB  H-Bb H-Mj S-Bb L-Bb L-Mn 
GO terms
Protein chains: GO type: GO description:
C=247-335 C host cell nucleus
C=247-335 C nuclear chromatin
C=247-335 C nucleus
C=247-335 F DNA-binding transcription factor activity, RNA polymerase II-specific
C=247-335 F sequence-specific DNA binding
C=247-335 F sequence-specific double-stranded DNA binding
C=247-335 P cell differentiation
C=247-335 P intestinal epithelial cell development
C=247-335 P lung goblet cell differentiation
C=247-335 P multicellular organism development
C=247-335 P negative regulation of cell fate commitment
C=247-335 P negative regulation of transcription by RNA polymerase II
C=247-335 P positive regulation of apoptotic process
C=247-335 P positive regulation of cell fate commitment
C=247-335 P positive regulation of transcription by RNA polymerase II
C=247-335 P regulation of transcription by RNA polymerase II
Sequences
Download file with secondary structure created by Stride  
1yo5.pdb1.pdb:   [ download sequences in FASTA format ]
A (dna): 
Click "SHOW" for view sequence
B (dna): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text