General information
PDB ID 1YTF
Title YEAST TFIIA/TBP/DNA COMPLEX
PDB header TRANSCRIPTION/DNA
Date 1996-04-05
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.5
Kind dna
Organism SACCHAROMYCES CEREVISIAE
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1ytf.pdb ABCD EF 0
Biounits:
1ytf.pdb1.pdb ABCD EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TBP Domain P13393_154-237 6e-33 1 CL0407 A 154 237 EF  S-Bb S-Mn L-Bb L-Mj L-Mn 
TBP Domain P13393_64-146 6.8e-33 1 CL0407 A 64 146 EF  S-Bb S-Mn L-Bb L-Mn 
TFIIA_gamma_C Domain P32774_63-118 2.3e-22 1 No_clan D 63 118   
TFIIA_gamma_N Domain P32774_6-52 6.7e-22 1 No_clan D 6 52   
TFIIA Family P32773_9-48 1e-14 1 No_clan B 9 47   
TFIIA Family P32773_241-285 1.2e-22 1 No_clan C 241 285 EF  S-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: Transcription factor IIA (TFIIA), beta-barrel domain
    Superfamily: Transcription factor IIA (TFIIA), beta-barrel domain
      Family: Transcription factor IIA (TFIIA), beta-barrel domain
Large chain TOA1, C-terminal domain C N/A N/A EF  S-Bb 
Class: All beta proteins
  Fold: Transcription factor IIA (TFIIA), beta-barrel domain
    Superfamily: Transcription factor IIA (TFIIA), beta-barrel domain
      Family: Transcription factor IIA (TFIIA), beta-barrel domain
Small chain TOA2, C-terminal domain D 55 119 -
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain A 61 155 EF  S-Bb S-Mn L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: TBP-like
    Superfamily: TATA-box binding protein-like
      Family: TATA-box binding protein (TBP), C-terminal domain
TATA-box binding protein (TBP), C-terminal domain A 156 240 EF  S-Bb S-Mn L-Bb L-Mn 
Class: All alpha proteins
  Fold: Transcription factor IIA (TFIIA), alpha-helical domain
    Superfamily: Transcription factor IIA (TFIIA), alpha-helical domain
      Family: Transcription factor IIA (TFIIA), alpha-helical domain
Large chain TOA1, N-terminal domain B N/A N/A -
Class: All alpha proteins
  Fold: Transcription factor IIA (TFIIA), alpha-helical domain
    Superfamily: Transcription factor IIA (TFIIA), alpha-helical domain
      Family: Transcription factor IIA (TFIIA), alpha-helical domain
Small chain TOA2, N-terminal domain D 5 54 -
GO terms
Protein chains: GO type: GO description:
A=61-240 C nucleoplasm
A=61-240 C nucleus
A=61-240 C protein-containing complex
A=61-240 C transcription factor TFIIA complex
A=61-240 C transcription factor TFIID complex
A=61-240 C transcription factor TFIIIB complex
A=61-240 C transcription regulator complex
A=61-240 F chromatin binding
A=61-240 F disordered domain specific binding
A=61-240 F DNA binding, bending
A=61-240 F DNA-binding transcription factor activity
A=61-240 F RNA polymerase I general transcription initiation factor binding
A=61-240 F RNA polymerase II activating transcription factor binding
A=61-240 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A=61-240 F RNA polymerase II core promoter sequence-specific DNA binding
A=61-240 F RNA polymerase II general transcription initiation factor activity
A=61-240 F RNA polymerase III general transcription initiation factor activity
A=61-240 F RNA polymerase III transcription regulatory region sequence-specific DNA binding
A=61-240 F TFIIA-class transcription factor complex binding
A=61-240 F transcription factor binding
A=61-240 P nucleolar large rRNA transcription by RNA polymerase I
A=61-240 P RNA polymerase I preinitiation complex assembly
A=61-240 P RNA polymerase II preinitiation complex assembly
A=61-240 P RNA polymerase III preinitiation complex assembly
A=61-240 P transcription by RNA polymerase II
A=61-240 P transposon integration
B=2-54, C=210-286 C cytoplasm
B=2-54, C=210-286 C transcription factor TFIIA complex
B=2-54, C=210-286 F RNA polymerase II core promoter sequence-specific DNA binding
B=2-54, C=210-286 F TBP-class protein binding
B=2-54, C=210-286 F transcription coregulator activity
B=2-54, C=210-286 P RNA polymerase II preinitiation complex assembly
B=2-54, C=210-286 P transcription by RNA polymerase II
B=2-54, C=210-286 P transcription initiation from RNA polymerase II promoter
D=2-122 C cytoplasm
D=2-122 C transcription factor TFIIA complex
D=2-122 F RNA polymerase II core promoter sequence-specific DNA binding
D=2-122 F TBP-class protein binding
D=2-122 F transcription coactivator activity
D=2-122 P positive regulation of DNA-binding transcription factor activity
D=2-122 P positive regulation of transcription by RNA polymerase II
D=2-122 P RNA polymerase II preinitiation complex assembly
D=2-122 P transcription initiation from RNA polymerase II promoter
Sequences
Download file with secondary structure created by Stride  
1ytf.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
Click "SHOW" for view sequence
F (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text