General information
PDB ID 1YVP
Title RO AUTOANTIGEN COMPLEXED WITH RNAS
PDB header RNA BINDING PROTEIN/RNA
Date 2005-02-16
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.2
Kind rna
Organism XENOPUS LAEVIS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1yvp.pdb AB CDEFGH 0
Biounits:
1yvp.pdb1.pdb A CDG 1
1yvp.pdb2.pdb B EFH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TROVE Domain P42700_16-330 8.1e-51 1 No_clan A 16 334 CGD   
TROVE Domain P42700_16-330 3.1e-51 1 No_clan B 16 369 EFH   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: alpha-alpha superhelix
    Superfamily: TROVE domain-like
      Family: TROVE domain-like
60-kda SS-aARo ribonucleoprotein A 5 363 CGD -
Class: Alpha and beta proteins (a/b)
  Fold: vWA-like
    Superfamily: vWA-like
      Family: RoRNP C-terminal domain-like
60-kda SS-A/Ro ribonucleoprotein, RoRNP A 364 537 -
Class: All alpha proteins
  Fold: alpha-alpha superhelix
    Superfamily: TROVE domain-like
      Family: TROVE domain-like
60-kda SS-aARo ribonucleoprotein B 5 363 EFH -
Class: Alpha and beta proteins (a/b)
  Fold: vWA-like
    Superfamily: vWA-like
      Family: RoRNP C-terminal domain-like
60-kda SS-A/Ro ribonucleoprotein, RoRNP B 364 537 -
GO terms
Protein chains: GO type: GO description:
A/B=1-538 C cytoplasm
A/B=1-538 F metal ion binding
A/B=1-538 F misfolded RNA binding
A/B=1-538 P cell projection organization
Sequences
Download file with secondary structure created by Stride  
1yvp.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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C (rna): 
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D (rna): 
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G (rna): 
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1yvp.pdb2.pdb:   [ download sequences in FASTA format ]
B (protein): 
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E (rna): 
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F (rna): 
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H (rna): 
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