General information
PDB ID 1Z1G
Title CRYSTAL STRUCTURE OF A LAMBDA INTEGRASE TETRAMER BOUND TO A HOLLIDAY JUNCTION
PDB header DNA BINDING PROTEIN/DNA
Date 2005-03-03
Experimental method X-RAY DIFFRACTION
Resolution (A) 4.4
Kind dna
Organism ENTEROBACTERIA PHAGE LAMBDA
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1z1g.pdb ABCD IJKLEFGH 0
Biounits:
1z1g.pdb1.pdb ABCD IJKLEFGH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Arm-DNA-bind_1 Domain P03700_8-69 2.7e-24 1 CL0081 A 8 69 EFG  H-Bb S-Bb S-Mj L-Bb L-Mj 
Phage_int_SAM_1 Domain P03700_80-158 0.00093 0 CL0469 A 80 158 IJ  H-Bb H-Mj L-Bb 
Arm-DNA-bind_1 Domain P03700_8-69 8.5e-24 1 CL0081 B 10 69 EF  S-Bb S-Mj L-Bb 
Phage_int_SAM_1 Domain P03700_80-158 0.00088 0 CL0469 B 80 158 JK  H-Bb H-Mj L-Bb 
Arm-DNA-bind_1 Domain P03700_8-69 2.7e-24 1 CL0081 C 8 69 GH  S-Bb S-Mj L-Bb 
Phage_int_SAM_1 Domain P03700_80-158 0.00093 0 CL0469 C 80 158 KL  H-Bb H-Mj L-Bb 
Arm-DNA-bind_1 Domain P03700_8-69 8.5e-24 1 CL0081 D 10 69 GH  S-Bb S-Mj L-Bb 
Phage_int_SAM_1 Domain P03700_80-158 0.00088 0 CL0469 D 80 158 IL  H-Bb H-Mj L-Bb 
Phage_integrase Family P03700_178-347 9.2e-24 1 CL0382 A 178 341 IJ  H-Bb H-Mj L-Bb 
Phage_integrase Family P03700_178-338 9e-24 1 CL0382 B 178 351 JK  H-Bb H-Mj L-Bb L-Mn 
Phage_integrase Family P03700_178-347 9.2e-24 1 CL0382 C 178 341 KL  H-Bb H-Mj L-Bb L-Mn 
Phage_integrase Family P03700_178-338 9e-24 1 CL0382 D 178 351 IL  H-Bb H-Mj L-Bb L-Mn 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: Alpha and beta proteins (a+b)
  Fold: DNA breaking-rejoining enzymes
    Superfamily: DNA breaking-rejoining enzymes
      Family: Lambda integrase-like, catalytic core
Integrase (Int) A 177 355 IJ  H-Bb H-Mj L-Bb 
Class: Alpha and beta proteins (a+b)
  Fold: DNA breaking-rejoining enzymes
    Superfamily: DNA breaking-rejoining enzymes
      Family: Lambda integrase-like, catalytic core
Integrase (Int) B 177 355 JK  H-Bb H-Mj L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: DNA breaking-rejoining enzymes
    Superfamily: DNA breaking-rejoining enzymes
      Family: Lambda integrase-like, catalytic core
Integrase (Int) C 177 355 KL  H-Bb H-Mj L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: DNA breaking-rejoining enzymes
    Superfamily: DNA breaking-rejoining enzymes
      Family: Lambda integrase-like, catalytic core
Integrase (Int) D 177 355 IL  H-Bb H-Mj L-Bb L-Mn 
Class: Alpha and beta proteins (a+b)
  Fold: DNA-binding domain
    Superfamily: DNA-binding domain
      Family: lambda integrase N-terminal domain
lambda integrase N-terminal domain A 11 59 EF -
Class: Alpha and beta proteins (a+b)
  Fold: DNA-binding domain
    Superfamily: DNA-binding domain
      Family: lambda integrase N-terminal domain
lambda integrase N-terminal domain B 11 59 EF -
Class: Alpha and beta proteins (a+b)
  Fold: DNA-binding domain
    Superfamily: DNA-binding domain
      Family: lambda integrase N-terminal domain
lambda integrase N-terminal domain C 11 59 GH -
Class: Alpha and beta proteins (a+b)
  Fold: DNA-binding domain
    Superfamily: DNA-binding domain
      Family: lambda integrase N-terminal domain
lambda integrase N-terminal domain D 11 59 GH -
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-356 F DNA binding
A/B/C/D=1-356 F hydrolase activity
A/B/C/D=1-356 F integrase activity
A/B/C/D=1-356 F transferase activity
A/B/C/D=1-356 P DNA integration
A/B/C/D=1-356 P DNA recombination
A/B/C/D=1-356 P establishment of integrated proviral latency
A/B/C/D=1-356 P provirus excision
A/B/C/D=1-356 P viral entry into host cell
A/B/C/D=1-356 P viral genome integration into host DNA
Sequences
Download file with secondary structure created by Stride  
1z1g.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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G (dna): 
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H (dna): 
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I (dna): 
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J (dna): 
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K (dna): 
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L (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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