General information
PDB ID 1ZQC
Title DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR)
PDB header TRANSFERASE/DNA
Date 1996-04-12
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.2
Kind dna
Organism HOMO SAPIENS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb1zqc.pdb A TP 0
Biounits:
1zqc.pdb1.pdb A TP 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_B_palm Domain P06746_149-262 2.8e-39 1 CL0260 A 149 262 TP  S-Bb S-Mn L-Bb 
DNA_pol_lambd_f Domain P06746_98-147 3.3e-19 1 CL0198 A 98 147 PT  H-Bb L-Bb 
HHH_8 Domain P06746_12-78 1.7e-18 1 CL0198 A 12 78   
DNA_pol_B_thumb Family P06746_268-334 1.5e-17 1 No_clan A 268 334   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: DNA polymerase beta, N-terminal domain-like
      Family: DNA polymerase beta, N-terminal domain-like
DNA polymerase beta, N-terminal (8 kD)-domain A 9 91 -
Class: All alpha proteins
  Fold: SAM domain-like
    Superfamily: PsbU/PolX domain-like
      Family: DNA polymerase beta-like, second domain
DNA polymerase beta A 92 148 PT -
Class: Alpha and beta proteins (a+b)
  Fold: Nucleotidyltransferase
    Superfamily: Nucleotidyltransferase
      Family: DNA polymerase beta-like
DNA polymerase beta, catalytic (31 kD) fragment A 149 335 TP -
GO terms
Protein chains: GO type: GO description:
A=1-335 C cytoplasm
A=1-335 C microtubule
A=1-335 C nucleoplasm
A=1-335 C nucleus
A=1-335 C protein-containing complex
A=1-335 C spindle microtubule
A=1-335 F damaged DNA binding
A=1-335 F DNA-(apurinic or apyrimidinic site) endonuclease activity
A=1-335 F DNA-directed DNA polymerase activity
A=1-335 F enzyme binding
A=1-335 F lyase activity
A=1-335 F metal ion binding
A=1-335 F microtubule binding
A=1-335 P aging
A=1-335 P base-excision repair
A=1-335 P base-excision repair, base-free sugar-phosphate removal
A=1-335 P base-excision repair, DNA ligation
A=1-335 P base-excision repair, gap-filling
A=1-335 P cellular response to DNA damage stimulus
A=1-335 P DNA repair
A=1-335 P DNA-dependent DNA replication
A=1-335 P double-strand break repair via nonhomologous end joining
A=1-335 P homeostasis of number of cells
A=1-335 P immunoglobulin heavy chain V-D-J recombination
A=1-335 P inflammatory response
A=1-335 P intrinsic apoptotic signaling pathway in response to DNA damage
A=1-335 P lymph node development
A=1-335 P neuron apoptotic process
A=1-335 P protein deubiquitination
A=1-335 P pyrimidine dimer repair
A=1-335 P response to ethanol
A=1-335 P response to gamma radiation
A=1-335 P response to hyperoxia
A=1-335 P salivary gland morphogenesis
A=1-335 P somatic hypermutation of immunoglobulin genes
A=1-335 P spleen development
Sequences
Download file with secondary structure created by Stride  
1zqc.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
Click "SHOW" for view sequence
T (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text