General information
PDB ID 2BH2
Title CRYSTAL STRUCTURE OF E. COLI 5-METHYLURIDINE METHYLTRANSFERASE RUMA IN COMPLEX WITH RIBOSOMAL RNA SUBSTRATE AND S-ADENOSYLHOMOCYSTEINE.
PDB header TRANSFERASE
Date 2005-01-06
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.15
Kind rna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2bh2.pdb AB CD 0
Biounits:
2bh2.pdb1.pdb A C 1
2bh2.pdb2.pdb B D 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TRAM Domain P55135_16-67 5.1e-12 1 CL0021 A 15 67 C   
TRAM Domain P55135_16-67 1.2e-11 1 CL0021 B 16 67 D   
tRNA_U5-meth_tr Family P55135_94-431 7.3e-28 1 CL0063 A 94 432 C   
tRNA_U5-meth_tr Family P55135_94-431 1.1e-27 1 CL0063 B 94 431 D   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: TRAM domain
rRNA (Uracil-5-)-methyltransferase RumA, N-terminal domain A 15 74 C -
Class: Alpha and beta proteins (a/b)
  Fold: S-adenosyl-L-methionine-dependent methyltransferases
    Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
      Family: (Uracil-5-)-methyltransferase
rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain A 75 432 C -
Class: All beta proteins
  Fold: OB-fold
    Superfamily: Nucleic acid-binding proteins
      Family: TRAM domain
rRNA (Uracil-5-)-methyltransferase RumA, N-terminal domain B 16 74 D -
Class: Alpha and beta proteins (a/b)
  Fold: S-adenosyl-L-methionine-dependent methyltransferases
    Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
      Family: (Uracil-5-)-methyltransferase
rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain B 75 431 D -
GO terms
Protein chains: GO type: GO description:
A/B=2-433 F 4 iron, 4 sulfur cluster binding
A/B=2-433 F iron ion binding
A/B=2-433 F RNA binding
A/B=2-433 F rRNA (uridine-C5-)-methyltransferase activity
A/B=2-433 P rRNA base methylation
Sequences
Download file with secondary structure created by Stride  
2bh2.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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C (rna): 
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2bh2.pdb2.pdb:   [ download sequences in FASTA format ]
B (protein): 
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D (rna): 
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