General information
PDB ID 2D45
Title CRYSTAL STRUCTURE OF THE MECI-MECA REPRESSOR-OPERATOR COMPLEX
PDB header TRANSCRIPTION/DNA
Date 2005-10-09
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.8
Kind dna
Organism STAPHYLOCOCCUS AUREUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2d45.pdb ABCD EFGH 0
Biounits:
2d45.pdb1.pdb ABCD EFGH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Penicillinase_R Family P68261_8-122 1.1e-31 1 CL0123 A 8 121 EF  H-Bb H-Mj L-Bb 
Penicillinase_R Family P68261_8-122 1.1e-31 1 CL0123 B 8 121 EF  H-Bb H-Mj L-Bb 
Penicillinase_R Family P68261_8-122 1.1e-31 1 CL0123 C 8 121 G  H-Bb H-Mj L-Bb 
Penicillinase_R Family P68261_8-122 9.8e-32 1 CL0123 D 8 121 GH  H-Bb H-Mj L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: Penicillinase repressor
Methicillin resistance regulatory protein MecI A 5 121 EF  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: Penicillinase repressor
Methicillin resistance regulatory protein MecI B 5 121 EF  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: Penicillinase repressor
Methicillin resistance regulatory protein MecI C 5 121 G  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: Penicillinase repressor
Methicillin resistance regulatory protein MecI D 7 121 GH  H-Bb H-Mj L-Bb 
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-123 C cytoplasm
A/B/C/D=1-123 F DNA binding
A/B/C/D=1-123 P negative regulation of transcription, DNA-templated
A/B/C/D=1-123 P response to antibiotic
Sequences
Download file with secondary structure created by Stride  
2d45.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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G (dna): 
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H (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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