General information
PDB ID 2DPD
Title CRYSTAL STRUCTURE OF THE REPLICATION TERMINATION PROTEIN IN COMPLEX WITH A PSEUDOSYMMETRIC B-SITE
PDB header DNA BINDING PROTEIN/DNA
Date 2006-05-09
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.17
Kind dna
Organism BACILLUS SUBTILIS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2dpd.pdb AB DE 0
Biounits:
2dpd.pdb1.pdb AB DE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RTP Domain P0CI76_10-122 1.4e-53 1 CL0123 A 10 122 DE  H-Bb H-Mj S-Bb L-Bb 
RTP Domain P0CI76_10-122 1.5e-53 1 CL0123 B 10 122 DE  H-Bb H-Mj S-Bb L-Bb 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: Replication terminator protein (RTP)
Replication terminator protein (RTP) A 8 122 DE  H-Bb H-Mj S-Bb L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: Replication terminator protein (RTP)
Replication terminator protein (RTP) B 8 122 DE  H-Bb H-Mj S-Bb L-Bb 
GO terms
Protein chains: GO type: GO description:
A/B=1-122 F DNA binding
A/B=1-122 P DNA replication termination
Sequences
Download file with secondary structure created by Stride  
2dpd.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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E (dna): 
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A (protein): 
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B (protein): 
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