General information
PDB ID 2GIC
Title CRYSTAL STRUCTURE OF A VESICULAR STOMATITIS VIRUS NUCLEOCAPSID-RNA COMPLEX
PDB header VIRUS/VIRAL PROTEIN/RNA
Date 2006-03-28
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.92
Kind rna
Organism VESICULAR STOMATITIS INDIANA VIRUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2gic.pdb ABCDE R 0
Biounits:
2gic.pdb1.pdb ABCDE R 2
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Rhabdo_ncap Family P03521_10-405 7.7e-198 1 No_clan A 10 405 R   
Rhabdo_ncap Family P03521_10-405 7.8e-192 1 No_clan B 10 405 R   
Rhabdo_ncap Family P03521_10-405 2.6e-190 1 No_clan C 10 405 R   
Rhabdo_ncap Family P03521_10-405 2.6e-192 1 No_clan D 10 405 R   
Rhabdo_ncap Family P03521_10-405 7.7e-198 1 No_clan E 10 405 R   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: Rhabdovirus nucleoprotein-like
    Superfamily: Rhabdovirus nucleoprotein-like
      Family: Rhabdovirus nucleocapsid protein
Nucleoprotein A 2 422 R -
Class: All alpha proteins
  Fold: Rhabdovirus nucleoprotein-like
    Superfamily: Rhabdovirus nucleoprotein-like
      Family: Rhabdovirus nucleocapsid protein
Nucleoprotein B 2 422 R -
Class: All alpha proteins
  Fold: Rhabdovirus nucleoprotein-like
    Superfamily: Rhabdovirus nucleoprotein-like
      Family: Rhabdovirus nucleocapsid protein
Nucleoprotein C 2 422 R -
Class: All alpha proteins
  Fold: Rhabdovirus nucleoprotein-like
    Superfamily: Rhabdovirus nucleoprotein-like
      Family: Rhabdovirus nucleocapsid protein
Nucleoprotein D 2 422 R -
Class: All alpha proteins
  Fold: Rhabdovirus nucleoprotein-like
    Superfamily: Rhabdovirus nucleoprotein-like
      Family: Rhabdovirus nucleocapsid protein
Nucleoprotein E 2 422 R -
GO terms
Protein chains: GO type: GO description:
A/B/C/D/E=1-422 C helical viral capsid
A/B/C/D/E=1-422 C host cell cytoplasm
A/B/C/D/E=1-422 C viral nucleocapsid
A/B/C/D/E=1-422 C virion
A/B/C/D/E=1-422 F RNA binding
A/B/C/D/E=1-422 P RNA replication
A/B/C/D/E=1-422 P viral transcription
Sequences
Download file with secondary structure created by Stride  
2gic.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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R (rna): 
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