General information
PDB ID 2HVY
Title CRYSTAL STRUCTURE OF AN H/ACA BOX RNP FROM PYROCOCCUS FURIOSUS
PDB header ISOMERASE/BIOSYNTHETIC PROTEIN/RNA
Date 2006-07-31
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.3
Kind rna
Organism PYROCOCCUS FURIOSUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2hvy.pdb ABCD E 0
Biounits:
2hvy.pdb1.pdb ABCD E 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DKCLD Domain Q7LWY0_9-63 1.2e-17 1 CL0649 A 13 66 E   
Gar1 Domain 4.1e-06 0 CL0575 B 1 74
Ribosomal_L7Ae Domain Q8U160_17-111 3e-32 1 CL0101 D 18 112 E   
TruB_C_2 Family Q7LWY0_181-248 7.2e-24 1 CL0649 A 184 251   
PUA Family Q7LWY0_251-324 2.1e-21 1 CL0178 A 254 327 E   
TruB_N Family Q7LWY0_67-123 5.9e-16 1 CL0649 A 70 126 E   
Nop10p Family Q8U1R4_3-52 1.1e-26 1 No_clan C 3 52 E   
RecR Family Q8U1R4_3-26 0.00021 0 No_clan C 4 27   
PolC_DP2 Family Q8U1R4_2-49 0.00041 0 No_clan C 3 50 E   
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All beta proteins
  Fold: PUA domain-like
    Superfamily: PUA domain-like
      Family: PUA domain
Pseudouridine synthase II TruB, C-terminal domain A 253 336 E -
Class: Alpha and beta proteins (a+b)
  Fold: Pseudouridine synthase
    Superfamily: Pseudouridine synthase
      Family: Pseudouridine synthase II TruB
Pseudouridine synthase II TruB A 11 252 E -
Class: All beta proteins
  Fold: Reductase/isomerase/elongation factor common domain
    Superfamily: Translation proteins
      Family: Gar1-like SnoRNP
Gar1 homolog PF1791 B 1 74 -
Class: Small proteins
  Fold: Rubredoxin-like
    Superfamily: Nop10-like SnoRNP
      Family: Nucleolar RNA-binding protein Nop10-like
Ribosome biogenesis protein Nop10 C 3 55 E -
Class: Alpha and beta proteins (a+b)
  Fold: Bacillus chorismate mutase-like
    Superfamily: L30e-like
      Family: L30e/L7ae ribosomal proteins
Ribosomal protein L7ae D 4 124 E -
GO terms
Protein chains: GO type: GO description:
A=1-340 F RNA binding
A=1-340 F tRNA pseudouridine synthase activity
A=1-340 P tRNA pseudouridine synthesis
C=1-60 F snoRNA binding
C=1-60 P pseudouridine synthesis
C=1-60 P rRNA processing
D=1-123 C cytoplasm
D=1-123 C ribonucleoprotein complex
D=1-123 C ribosome
D=1-123 F ribonuclease P activity
D=1-123 F rRNA binding
D=1-123 F structural constituent of ribosome
D=1-123 P rRNA processing
D=1-123 P translation
D=1-123 P tRNA 5'-leader removal
Sequences
Download file with secondary structure created by Stride  
2hvy.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (rna): 
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