General information
PDB ID 2IT0
Title CRYSTAL STRUCTURE OF A TWO-DOMAIN IDER-DNA COMPLEX CRYSTAL FORM II
PDB header TRANSCRIPTION/DNA
Date 2006-10-18
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.6
Kind dna
Organism MYCOBACTERIUM TUBERCULOSIS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb2it0.pdb ABCD EF 0
Biounits:
2it0.pdb1.pdb ABCD EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Fe_dep_repr_C Domain P9WMH1_65-134 9.5e-30 1 CL0123 A 65 134   
Fe_dep_repress Domain P9WMH1_3-62 1.5e-21 1 CL0123 A 3 62 EF  H-Bb H-Mj L-Bb L-Mj 
Fe_dep_repr_C Domain P9WMH1_65-134 9.5e-30 1 CL0123 B 65 134   
Fe_dep_repress Domain P9WMH1_3-62 1.5e-21 1 CL0123 B 3 62 EF  H-Bb H-Mj L-Bb L-Mj 
Fe_dep_repr_C Domain P9WMH1_65-134 8.2e-30 1 CL0123 C 65 134   
Fe_dep_repress Domain P9WMH1_3-62 1.4e-21 1 CL0123 C 3 62 EF  H-Bb H-Mj L-Bb L-Mj L-Mn 
Fe_dep_repr_C Domain P9WMH1_65-134 8.2e-30 1 CL0123 D 65 134   
Fe_dep_repress Domain P9WMH1_3-62 1.4e-21 1 CL0123 D 3 62 EF  H-Bb H-Mj L-Bb L-Mj 
SCOP domains
Classification: Protein: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: Iron-dependent repressor protein
Iron-dependent regulator IdeR A 3 64 EF  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: Iron-dependent repressor protein
Iron-dependent regulator IdeR B 3 64 EF  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: Iron-dependent repressor protein
Iron-dependent regulator IdeR C 3 64 EF  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: DNA/RNA-binding 3-helical bundle
    Superfamily: "Winged helix" DNA-binding domain
      Family: Iron-dependent repressor protein
Iron-dependent regulator IdeR D 3 64 EF  H-Bb H-Mj L-Bb 
Class: All alpha proteins
  Fold: Iron-dependent repressor protein, dimerization domain
    Superfamily: Iron-dependent repressor protein, dimerization domain
      Family: Iron-dependent repressor protein, dimerization domain
Iron-dependent regulator A 65 140 -
Class: All alpha proteins
  Fold: Iron-dependent repressor protein, dimerization domain
    Superfamily: Iron-dependent repressor protein, dimerization domain
      Family: Iron-dependent repressor protein, dimerization domain
Iron-dependent regulator B 65 140 -
Class: All alpha proteins
  Fold: Iron-dependent repressor protein, dimerization domain
    Superfamily: Iron-dependent repressor protein, dimerization domain
      Family: Iron-dependent repressor protein, dimerization domain
Iron-dependent regulator C 65 139 -
Class: All alpha proteins
  Fold: Iron-dependent repressor protein, dimerization domain
    Superfamily: Iron-dependent repressor protein, dimerization domain
      Family: Iron-dependent repressor protein, dimerization domain
Iron-dependent regulator D 65 139 -
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-140 C extracellular region
A/B/C/D=1-140 C cell wall
A/B/C/D=1-140 C cytoplasm
A/B/C/D=1-140 C plasma membrane
A/B/C/D=1-140 F peptidoglycan L,D-transpeptidase activity
A/B/C/D=1-140 F transferase activity, transferring acyl groups
A/B/C/D=1-140 F cadmium ion binding
A/B/C/D=1-140 F cobalt ion binding
A/B/C/D=1-140 F DNA binding
A/B/C/D=1-140 F DNA-binding transcription factor activity
A/B/C/D=1-140 F ferrous iron binding
A/B/C/D=1-140 F iron ion binding
A/B/C/D=1-140 F manganese ion binding
A/B/C/D=1-140 F nickel cation binding
A/B/C/D=1-140 F protein dimerization activity
A/B/C/D=1-140 F zinc ion binding
A/B/C/D=1-140 P cell wall organization
A/B/C/D=1-140 P peptidoglycan-protein cross-linking
A/B/C/D=1-140 P regulation of cell shape
A/B/C/D=1-140 P negative regulation of transcription, DNA-templated
A/B/C/D=1-140 P regulation of transcription, DNA-templated
A/B/C/D=1-140 P response to oxidative stress
A/B/C/D=1-140 P siderophore biosynthetic process from catechol
Sequences
Download file with secondary structure created by Stride  
2it0.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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